miRNA display CGI


Results 141 - 160 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 137893 0.67 0.680127
Target:  5'- cGGCGCCCCaGCGCCgCgGaGCUAcuGCGGCu -3'
miRNA:   3'- -UCGUGGGGaUGUGG-GaC-CGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 94465 0.67 0.680127
Target:  5'- cGUuUCCCUggGCGCCCUcGCCGGCGGu -3'
miRNA:   3'- uCGuGGGGA--UGUGGGAcCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 39361 0.67 0.680127
Target:  5'- cAGCACggCCUGCACgUugcgGGCCAGCuGCu -3'
miRNA:   3'- -UCGUGg-GGAUGUGgGa---CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 34646 0.67 0.680127
Target:  5'- uGCACaCCCgggccaccgGCGCCagGGCCAGCGc- -3'
miRNA:   3'- uCGUG-GGGa--------UGUGGgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 102899 0.67 0.670033
Target:  5'- gGGCGCCCaaGCGCCCcucGGUCuGCAc- -3'
miRNA:   3'- -UCGUGGGgaUGUGGGa--CCGGuCGUug -5'
21382 5' -59.3 NC_004812.1 + 136213 0.67 0.670033
Target:  5'- cGCACCCaccgccagcuCUACGCCCugcucaUGGCCcacaagcGCGACu -3'
miRNA:   3'- uCGUGGG----------GAUGUGGG------ACCGGu------CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 45347 0.67 0.670033
Target:  5'- cGUugCCC-GCGCCCacgGGCCGcaccgcguagauGCAGCg -3'
miRNA:   3'- uCGugGGGaUGUGGGa--CCGGU------------CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 52306 0.67 0.670033
Target:  5'- aGGCGccguCCCCgccguCGCCC--GCCGGCGACg -3'
miRNA:   3'- -UCGU----GGGGau---GUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 101589 0.67 0.670033
Target:  5'- aGGCACgCCggguUACCCaUGGCCAG-GGCg -3'
miRNA:   3'- -UCGUGgGGau--GUGGG-ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 90706 0.67 0.670033
Target:  5'- cAGCACCCacggGC-CCCUGcGCUugggGGCGAUg -3'
miRNA:   3'- -UCGUGGGga--UGuGGGAC-CGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 31933 0.67 0.670033
Target:  5'- cGCGCCgCUcGCuCCCcggGGCCAGCGu- -3'
miRNA:   3'- uCGUGGgGA-UGuGGGa--CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 91314 0.67 0.670033
Target:  5'- gGGCACCUgguCGCggcgGGCCAGCAGCu -3'
miRNA:   3'- -UCGUGGGgauGUGgga-CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105008 0.67 0.659909
Target:  5'- cGGCGCCCCUcGCGCCCcgcGGugccgacugacCCGGCGc- -3'
miRNA:   3'- -UCGUGGGGA-UGUGGGa--CC-----------GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 104450 0.67 0.659909
Target:  5'- gAGCGCCCUgcugaGCGCCaaGGUCAcCAACa -3'
miRNA:   3'- -UCGUGGGGa----UGUGGgaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73810 0.67 0.659909
Target:  5'- cGGCGCCCCgcgcuccCACCCcagcucgucCCAGCGGCa -3'
miRNA:   3'- -UCGUGGGGau-----GUGGGacc------GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 88017 0.67 0.659909
Target:  5'- uGgACCCUguuCACCCggagGGCCGGCc-- -3'
miRNA:   3'- uCgUGGGGau-GUGGGa---CCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 137548 0.67 0.659909
Target:  5'- cGC-CCCCgaggUCCUGGCCGGgGACc -3'
miRNA:   3'- uCGuGGGGauguGGGACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 146041 0.67 0.659909
Target:  5'- uGC-CCCCgGCACCgCUcGCCGGCAcGCa -3'
miRNA:   3'- uCGuGGGGaUGUGG-GAcCGGUCGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 104148 0.67 0.659909
Target:  5'- --aACCCCUucgGgGCCCUGGCCgucgGGCuGCu -3'
miRNA:   3'- ucgUGGGGA---UgUGGGACCGG----UCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 26632 0.67 0.658896
Target:  5'- cAGCGCCUCgugggUGCGCUgguaguucuuauaUUGGCCGGCGAa -3'
miRNA:   3'- -UCGUGGGG-----AUGUGG-------------GACCGGUCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.