miRNA display CGI


Results 161 - 180 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 72267 0.67 0.655853
Target:  5'- cGCACCCCgcuuccgccugccccCGCCCgGGgcgcuccCCGGCGACg -3'
miRNA:   3'- uCGUGGGGau-------------GUGGGaCC-------GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89915 0.67 0.653824
Target:  5'- gAGCACaCCCUcaGCACCUauguaugacgacggGGCCcgcgAGCGGCg -3'
miRNA:   3'- -UCGUG-GGGA--UGUGGGa-------------CCGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 2624 0.67 0.649763
Target:  5'- uGGCGCCgCg--GCCCaGGCgCGGCGGCg -3'
miRNA:   3'- -UCGUGGgGaugUGGGaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73623 0.67 0.649763
Target:  5'- uGGCGCCCCcGCGCCugCUGGagCAGUucgAGCa -3'
miRNA:   3'- -UCGUGGGGaUGUGG--GACCg-GUCG---UUG- -5'
21382 5' -59.3 NC_004812.1 + 151684 0.67 0.649763
Target:  5'- cAGCGCCgCCU---CCCgGGCC-GCAGCg -3'
miRNA:   3'- -UCGUGG-GGAuguGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 101154 0.67 0.649763
Target:  5'- uGCGCUUCUGCgACCUgacGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGGAUG-UGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16018 0.67 0.649763
Target:  5'- cGGCGCCCaugGCGgCCagGGUCAGCGcGCa -3'
miRNA:   3'- -UCGUGGGga-UGUgGGa-CCGGUCGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 128132 0.67 0.649763
Target:  5'- uGGCGCCgCg--GCCCaGGCgCGGCGGCg -3'
miRNA:   3'- -UCGUGGgGaugUGGGaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 2958 0.67 0.649763
Target:  5'- gAGCACgCCCUgcGCGCCCaGcGCCgagacgucgGGCGGCc -3'
miRNA:   3'- -UCGUG-GGGA--UGUGGGaC-CGG---------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73841 0.67 0.648748
Target:  5'- gAGcCGCUCCUGgcucgucCGCCCUGGCCAucuuuCAGCc -3'
miRNA:   3'- -UC-GUGGGGAU-------GUGGGACCGGUc----GUUG- -5'
21382 5' -59.3 NC_004812.1 + 74556 0.68 0.64062
Target:  5'- cGGCACCCgCgcCACCaCguccucgcggaggcgGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGG-GauGUGG-Ga--------------CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 51489 0.68 0.639603
Target:  5'- cGCAgCCCUGCgcggucGCUUUGGCCGcGCAGg -3'
miRNA:   3'- uCGUgGGGAUG------UGGGACCGGU-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 18579 0.68 0.639603
Target:  5'- cGcCGCCgCCgccGCACCC-GcGCCGGCGGCg -3'
miRNA:   3'- uC-GUGG-GGa--UGUGGGaC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96479 0.68 0.639603
Target:  5'- cGGC-CCCCgcggaggACGCCgccGCCAGCGGCg -3'
miRNA:   3'- -UCGuGGGGa------UGUGGgacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 134853 0.68 0.639603
Target:  5'- uGCACuCCCUG-ACCCcGcCCGGCGACg -3'
miRNA:   3'- uCGUG-GGGAUgUGGGaCcGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77130 0.68 0.638587
Target:  5'- gAGCGCgUCCUcggccagGCGCCgCgucucGGCCGGCAGCc -3'
miRNA:   3'- -UCGUG-GGGA-------UGUGG-Ga----CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 148976 0.68 0.633504
Target:  5'- cGCGCCCCg--ACCCcGGCCGccgcgcgucuccggcGCGACc -3'
miRNA:   3'- uCGUGGGGaugUGGGaCCGGU---------------CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 120718 0.68 0.633504
Target:  5'- gAGgACCCCUGCgggcucuuccaggagGCCuacccccccgCUGcGCCAGCGACc -3'
miRNA:   3'- -UCgUGGGGAUG---------------UGG----------GAC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 118075 0.68 0.633504
Target:  5'- cGCGCCCCg--ACCCcGGCCGccgcgcgucuccggcGCGACc -3'
miRNA:   3'- uCGUGGGGaugUGGGaCCGGU---------------CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 25683 0.68 0.629438
Target:  5'- cGCuguCCCCgccguCGUCCgcggGGCCGGCGACg -3'
miRNA:   3'- uCGu--GGGGau---GUGGGa---CCGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.