miRNA display CGI


Results 61 - 80 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 29811 0.66 0.729835
Target:  5'- cGGCGCCCCgccuccggGgACCCUgggGGCCGGa--- -3'
miRNA:   3'- -UCGUGGGGa-------UgUGGGA---CCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 30148 0.66 0.749198
Target:  5'- gGGCuCCCCUAgGCCUccacaGCCGGgAGCg -3'
miRNA:   3'- -UCGuGGGGAUgUGGGac---CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 30258 0.66 0.720024
Target:  5'- aAGUGCCaCC-ACGCCCccgGGCCcagggcGCAGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa--CCGGu-----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 30903 0.68 0.619274
Target:  5'- cGCGCCCCgcggGCACCUc--CCGGCAGa -3'
miRNA:   3'- uCGUGGGGa---UGUGGGaccGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 31933 0.67 0.670033
Target:  5'- cGCGCCgCUcGCuCCCcggGGCCAGCGu- -3'
miRNA:   3'- uCGUGGgGA-UGuGGGa--CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 32372 0.68 0.598983
Target:  5'- cGCGCCCCccGCcagGCCCgccGCCAGguGCg -3'
miRNA:   3'- uCGUGGGGa-UG---UGGGac-CGGUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 33751 0.68 0.60912
Target:  5'- gAGCACUucuuCCUGCggGCCCUcacgGGCuCGGCGGCc -3'
miRNA:   3'- -UCGUGG----GGAUG--UGGGA----CCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 33825 0.66 0.758732
Target:  5'- gAGCccGCCCCguccucgguCACCCUcGGCgGGCGc- -3'
miRNA:   3'- -UCG--UGGGGau-------GUGGGA-CCGgUCGUug -5'
21382 5' -59.3 NC_004812.1 + 33867 0.66 0.729835
Target:  5'- cGCGCCCuCUcccCGCCCgcccgcaugGGCCGGCc-- -3'
miRNA:   3'- uCGUGGG-GAu--GUGGGa--------CCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 34250 0.7 0.519302
Target:  5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3'
miRNA:   3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 34389 0.66 0.749198
Target:  5'- gAGC-CCCCcGCGCCCgcccccgGGgCGGCGc- -3'
miRNA:   3'- -UCGuGGGGaUGUGGGa------CCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 34646 0.67 0.680127
Target:  5'- uGCACaCCCgggccaccgGCGCCagGGCCAGCGc- -3'
miRNA:   3'- uCGUG-GGGa--------UGUGGgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 34747 0.7 0.49999
Target:  5'- cGCcCCUCUGCGCCgUGGUCGccGCGGCc -3'
miRNA:   3'- uCGuGGGGAUGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 35101 0.7 0.49999
Target:  5'- gGGCGCCCCcgcgGCGCCC-GGCCccacGCGc- -3'
miRNA:   3'- -UCGUGGGGa---UGUGGGaCCGGu---CGUug -5'
21382 5' -59.3 NC_004812.1 + 35261 0.66 0.758732
Target:  5'- gGGCGCgCgUgcaacauggcgcGCGCCCUGGCCgaGGCGu- -3'
miRNA:   3'- -UCGUGgGgA------------UGUGGGACCGG--UCGUug -5'
21382 5' -59.3 NC_004812.1 + 36005 0.67 0.690182
Target:  5'- aGGCGCUCCagGCugCggUGGCgGGCGGCg -3'
miRNA:   3'- -UCGUGGGGa-UGugGg-ACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 36533 0.66 0.749198
Target:  5'- cGCACCgC--CGCCgUGGCCAcgGCGGCc -3'
miRNA:   3'- uCGUGGgGauGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 37208 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 37661 0.66 0.729835
Target:  5'- cGCAgUCCcACACCagcggGGgCAGCAGCg -3'
miRNA:   3'- uCGUgGGGaUGUGGga---CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 38312 0.66 0.758732
Target:  5'- cGcCACCCagcggaUGCGCCCgugGGCgAGcCGGCg -3'
miRNA:   3'- uC-GUGGGg-----AUGUGGGa--CCGgUC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.