miRNA display CGI


Results 101 - 120 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 50031 0.69 0.5389
Target:  5'- cGCGCCgUCUGCGCCC-GGCCcgGGCGc- -3'
miRNA:   3'- uCGUGG-GGAUGUGGGaCCGG--UCGUug -5'
21382 5' -59.3 NC_004812.1 + 50174 0.7 0.509608
Target:  5'- gGGCcCUCUUGgGCCCgUGGCCGGCGc- -3'
miRNA:   3'- -UCGuGGGGAUgUGGG-ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 50691 0.66 0.710139
Target:  5'- aGGCGCUCCUcgggcgcgacGgACCCaGGCCA-CGACg -3'
miRNA:   3'- -UCGUGGGGA----------UgUGGGaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51317 0.79 0.151865
Target:  5'- gGGCAgCCCUACGCCCaGGCCAGg--- -3'
miRNA:   3'- -UCGUgGGGAUGUGGGaCCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 51370 0.68 0.619274
Target:  5'- cGCGCCCCagUACGCCCagcagugggagGcGCCGGCcGCc -3'
miRNA:   3'- uCGUGGGG--AUGUGGGa----------C-CGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 51489 0.68 0.639603
Target:  5'- cGCAgCCCUGCgcggucGCUUUGGCCGcGCAGg -3'
miRNA:   3'- uCGUgGGGAUG------UGGGACCGGU-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 51540 0.66 0.710139
Target:  5'- cGGCGCCggggggccagUgUGCGCCCgcGGCCggAGCGGCg -3'
miRNA:   3'- -UCGUGG----------GgAUGUGGGa-CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 52213 0.66 0.758732
Target:  5'- uGCGCUCCauggccgACACCagGGCCAuGUAGCg -3'
miRNA:   3'- uCGUGGGGa------UGUGGgaCCGGU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 52306 0.67 0.670033
Target:  5'- aGGCGccguCCCCgccguCGCCC--GCCGGCGACg -3'
miRNA:   3'- -UCGU----GGGGau---GUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54274 0.66 0.758732
Target:  5'- cGCACCCCgguUAUUCcGGUCGcGCGACa -3'
miRNA:   3'- uCGUGGGGau-GUGGGaCCGGU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54424 0.69 0.5389
Target:  5'- uGCACCaCCgugGCGCC--GGUCGGCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGgaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54715 0.68 0.598983
Target:  5'- cGCGCCUCgggGCGCCCUaGcCCGGCGc- -3'
miRNA:   3'- uCGUGGGGa--UGUGGGAcC-GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 54799 0.67 0.690182
Target:  5'- gGGCcCCCCggccgcgaGCCUgggGGCCAGguGCu -3'
miRNA:   3'- -UCGuGGGGaug-----UGGGa--CCGGUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 55131 0.69 0.548794
Target:  5'- cGCcggaCCCUGCGCCagGGCCAGgAGCu -3'
miRNA:   3'- uCGug--GGGAUGUGGgaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 55396 0.76 0.215882
Target:  5'- cGGCGCCCCUGCuggcggccgcggggcCCCUGGCCccGCAGa -3'
miRNA:   3'- -UCGUGGGGAUGu--------------GGGACCGGu-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 55588 0.66 0.720024
Target:  5'- cAGCGCCCC-AgGCUC--GCCAGCGAg -3'
miRNA:   3'- -UCGUGGGGaUgUGGGacCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 55718 0.67 0.690182
Target:  5'- cGCGCCCC-GC-CUCgggGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGGaUGuGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 55729 0.68 0.60912
Target:  5'- cGCACCCCgcguuccgggACGCCCUGuucGCCgAGCu-- -3'
miRNA:   3'- uCGUGGGGa---------UGUGGGAC---CGG-UCGuug -5'
21382 5' -59.3 NC_004812.1 + 55770 0.69 0.548794
Target:  5'- cGCG-CCCUGC-CCCUGGgCAGCcccGCg -3'
miRNA:   3'- uCGUgGGGAUGuGGGACCgGUCGu--UG- -5'
21382 5' -59.3 NC_004812.1 + 55979 0.72 0.383652
Target:  5'- cGCGCCgCCgUGCGCgcgauCCUGGCCGGCGc- -3'
miRNA:   3'- uCGUGG-GG-AUGUG-----GGACCGGUCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.