miRNA display CGI


Results 121 - 140 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 56149 0.66 0.758732
Target:  5'- cGCGCCCCUcuACGCCCgcaccacGCCcucGCAGu -3'
miRNA:   3'- uCGUGGGGA--UGUGGGac-----CGGu--CGUUg -5'
21382 5' -59.3 NC_004812.1 + 56263 0.78 0.181162
Target:  5'- cGCGCCCCUGCGCCUc-GCCcGCGGCg -3'
miRNA:   3'- uCGUGGGGAUGUGGGacCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 56331 0.66 0.739563
Target:  5'- cGCGCCgCCUccgagaACCCggaGGCguGCGGCa -3'
miRNA:   3'- uCGUGG-GGAug----UGGGa--CCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 56952 0.72 0.375468
Target:  5'- cGGCGCCCUcuaccgggGCAUCCUGaGCCAGUAc- -3'
miRNA:   3'- -UCGUGGGGa-------UGUGGGAC-CGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 57206 0.67 0.680127
Target:  5'- uGCGCCCCgACgACCCcaGCCGccGCAGCg -3'
miRNA:   3'- uCGUGGGGaUG-UGGGacCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 57490 0.68 0.619274
Target:  5'- --gGCCaCCUGCGggUCCUGGCCGGCc-- -3'
miRNA:   3'- ucgUGG-GGAUGU--GGGACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 58070 0.71 0.453204
Target:  5'- cGGCGCCCg-GCGCCgaGGCCGcGCAcACg -3'
miRNA:   3'- -UCGUGGGgaUGUGGgaCCGGU-CGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 58168 0.7 0.49999
Target:  5'- gGGCGCCCCcGCGCCUgccGCCccGCGGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGac-CGGu-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 58252 0.66 0.746318
Target:  5'- cGUACCUg-GCGCCCUacgacgaggacgacGGCCGGuCGGCg -3'
miRNA:   3'- uCGUGGGgaUGUGGGA--------------CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 58658 0.67 0.680127
Target:  5'- cGGCGCCCUggAC-CCCaccGGCCAGgCGAa -3'
miRNA:   3'- -UCGUGGGGa-UGuGGGa--CCGGUC-GUUg -5'
21382 5' -59.3 NC_004812.1 + 59092 0.73 0.359458
Target:  5'- uGCGCCCCUcgACCgaCUGGCUGGCAAa -3'
miRNA:   3'- uCGUGGGGAugUGG--GACCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 59348 0.66 0.736654
Target:  5'- aGGCACCCCgcguuaaacuccgucCACCC-GGCCccGCAGg -3'
miRNA:   3'- -UCGUGGGGau-------------GUGGGaCCGGu-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 59779 0.8 0.126935
Target:  5'- cGCACCgCUcgagguagaacaGCAUCUUGGCCAGCAGCg -3'
miRNA:   3'- uCGUGGgGA------------UGUGGGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 60125 0.66 0.729835
Target:  5'- cGCGCCagcggcguguCCUGC-CCCUccaggaggGGCCAGgCGGCg -3'
miRNA:   3'- uCGUGG----------GGAUGuGGGA--------CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 60300 0.68 0.618258
Target:  5'- cGCGCCCCcccuuggggGCcuuGCCCUGGCCgccgucgAGCAu- -3'
miRNA:   3'- uCGUGGGGa--------UG---UGGGACCGG-------UCGUug -5'
21382 5' -59.3 NC_004812.1 + 61112 0.67 0.680127
Target:  5'- cGGCGCCCCgcgGCGCgCCgGcGCCcGCGcACa -3'
miRNA:   3'- -UCGUGGGGa--UGUG-GGaC-CGGuCGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 61985 0.69 0.5389
Target:  5'- cGCGCCCgUcucuccGCGCCCaggGGCC-GCGGCu -3'
miRNA:   3'- uCGUGGGgA------UGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 62323 0.73 0.343931
Target:  5'- cGCACCCaggcgcACGCCCgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGga----UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 62353 0.69 0.552768
Target:  5'- cGCGCCCgCggcGCGugggucggcgcgaacCCCaGGCCGGCGACg -3'
miRNA:   3'- uCGUGGG-Ga--UGU---------------GGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 63083 0.66 0.749198
Target:  5'- cGCACCC--GCGCCCcgccucGGCCuucgucaccucgAGCGACg -3'
miRNA:   3'- uCGUGGGgaUGUGGGa-----CCGG------------UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.