miRNA display CGI


Results 141 - 160 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 63521 0.66 0.746318
Target:  5'- aAGCGCCCgCUGgGCCCgagcuccagggucgUggguccGGCCGGCAGg -3'
miRNA:   3'- -UCGUGGG-GAUgUGGG--------------A------CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 64494 0.66 0.728858
Target:  5'- cGCAUCCCccagagcACGCCCgaggaGGCCgugcuccucgacaAGCAGCa -3'
miRNA:   3'- uCGUGGGGa------UGUGGGa----CCGG-------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 65073 0.69 0.529067
Target:  5'- cGGCgGCCgCCgcCGCCCUGGCCGcGCGc- -3'
miRNA:   3'- -UCG-UGG-GGauGUGGGACCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 65501 0.69 0.5389
Target:  5'- aAGCgACCCC-ACGgCCggcaGGCCGGCGAg -3'
miRNA:   3'- -UCG-UGGGGaUGUgGGa---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 66324 0.69 0.536928
Target:  5'- aGGCGCCCgU-CGCCCgcgcugcaggcgGGgCAGCAGCc -3'
miRNA:   3'- -UCGUGGGgAuGUGGGa-----------CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66611 0.67 0.690182
Target:  5'- gGGcCGCUCC-ACGCCCaGGCCGuCGGCa -3'
miRNA:   3'- -UC-GUGGGGaUGUGGGaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66777 0.69 0.5389
Target:  5'- cGCACgCCUGCACCCgcgccuCCAGCcACu -3'
miRNA:   3'- uCGUGgGGAUGUGGGacc---GGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 67609 0.72 0.408902
Target:  5'- cGCACUCCUuccaguucaucaGgGCCgUGGCCAGgGACg -3'
miRNA:   3'- uCGUGGGGA------------UgUGGgACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 68007 0.66 0.747279
Target:  5'- cGCGCCCCgugaaaGCACagggcguugcuggUCUGcaucgccGCCAGCAGCa -3'
miRNA:   3'- uCGUGGGGa-----UGUG-------------GGAC-------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 68194 0.69 0.5389
Target:  5'- gGGCGCgCCggACGCCC-GGCCGcgcGCGGCc -3'
miRNA:   3'- -UCGUGgGGa-UGUGGGaCCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 69551 0.72 0.375468
Target:  5'- cGCGCCCCU--GCCCgcgGcGCCGGCcGCg -3'
miRNA:   3'- uCGUGGGGAugUGGGa--C-CGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 69847 0.66 0.739563
Target:  5'- cGCGCCCgcgucgcgCUGCGCCaUGGCCGacGCGGa -3'
miRNA:   3'- uCGUGGG--------GAUGUGGgACCGGU--CGUUg -5'
21382 5' -59.3 NC_004812.1 + 70983 0.66 0.720024
Target:  5'- gAGCACCgCgGgGCCCgcgGGUCGGCcGCc -3'
miRNA:   3'- -UCGUGGgGaUgUGGGa--CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 71097 0.72 0.395306
Target:  5'- aGGCGCCCaaACACCCgcuccagGGCCgacuccagcccccgcGGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGa------CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 71334 0.68 0.619274
Target:  5'- uGGgGCCCgCUGCACaCCgcggugacgcUGGCCAGCu-- -3'
miRNA:   3'- -UCgUGGG-GAUGUG-GG----------ACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 72267 0.67 0.655853
Target:  5'- cGCACCCCgcuuccgccugccccCGCCCgGGgcgcuccCCGGCGACg -3'
miRNA:   3'- uCGUGGGGau-------------GUGGGaCC-------GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 72856 0.68 0.598983
Target:  5'- gGGCGCgCUgGCGuCCCUGGC-GGCAGCc -3'
miRNA:   3'- -UCGUGgGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73010 0.68 0.629438
Target:  5'- cGCACCCacugGCGCCCgcuGCUggAGCGGCu -3'
miRNA:   3'- uCGUGGGga--UGUGGGac-CGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73241 0.66 0.758732
Target:  5'- cGgACCgCCgcCGCCCUggGGCCGGCGc- -3'
miRNA:   3'- uCgUGG-GGauGUGGGA--CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 73623 0.67 0.649763
Target:  5'- uGGCGCCCCcGCGCCugCUGGagCAGUucgAGCa -3'
miRNA:   3'- -UCGUGGGGaUGUGG--GACCg-GUCG---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.