miRNA display CGI


Results 161 - 180 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 73810 0.67 0.659909
Target:  5'- cGGCGCCCCgcgcuccCACCCcagcucgucCCAGCGGCa -3'
miRNA:   3'- -UCGUGGGGau-----GUGGGacc------GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73841 0.67 0.648748
Target:  5'- gAGcCGCUCCUGgcucgucCGCCCUGGCCAucuuuCAGCc -3'
miRNA:   3'- -UC-GUGGGGAU-------GUGGGACCGGUc----GUUG- -5'
21382 5' -59.3 NC_004812.1 + 74257 0.66 0.720024
Target:  5'- aGGUACgCCU-CGCCCcGGCCGcGCAc- -3'
miRNA:   3'- -UCGUGgGGAuGUGGGaCCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 74538 0.68 0.598983
Target:  5'- cGCGCCCUcgauCcUCCUGGCC-GCAGCc -3'
miRNA:   3'- uCGUGGGGau--GuGGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 74556 0.68 0.64062
Target:  5'- cGGCACCCgCgcCACCaCguccucgcggaggcgGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGG-GauGUGG-Ga--------------CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 74651 0.69 0.546811
Target:  5'- cGGCgcucuugGCCCCgaugGCGCCCugguacuUGGCCGGgAGCc -3'
miRNA:   3'- -UCG-------UGGGGa---UGUGGG-------ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 74969 0.68 0.616227
Target:  5'- gAGC-CUCCUgcugaucagcauguACGCCCUggcGGCCAGgGGCg -3'
miRNA:   3'- -UCGuGGGGA--------------UGUGGGA---CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 75090 0.66 0.729835
Target:  5'- gAGCGCgCCUGCuccagcgUCUUGGCC-GCGGCc -3'
miRNA:   3'- -UCGUGgGGAUGu------GGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 75246 0.72 0.383652
Target:  5'- aAGCGCgCCCUcacggcCGCCCUGGCgGGCcuGCg -3'
miRNA:   3'- -UCGUG-GGGAu-----GUGGGACCGgUCGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 75368 0.69 0.558744
Target:  5'- gAGCGCCCCgacGCACgC-GGCCAG-GGCg -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 76053 0.69 0.5389
Target:  5'- cGGCGgCCCaGCGCUCgcGGCCGGCGcggGCg -3'
miRNA:   3'- -UCGUgGGGaUGUGGGa-CCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 76201 0.7 0.49999
Target:  5'- cGGguCCCCggcggaGCCCUcGGCguGCAGCa -3'
miRNA:   3'- -UCguGGGGaug---UGGGA-CCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76525 0.66 0.733737
Target:  5'- cGGCugCCUggucgaggGCggggcguggacgcggGCCUcGGCCGGCAGCg -3'
miRNA:   3'- -UCGugGGGa-------UG---------------UGGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76761 0.68 0.588871
Target:  5'- cGCugUCgUACACCCUGGUCAcCAuagGCg -3'
miRNA:   3'- uCGugGGgAUGUGGGACCGGUcGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 76766 0.66 0.710139
Target:  5'- gGGUGCUCCaGgGCCCcccgguacUGGCCcAGCAGCc -3'
miRNA:   3'- -UCGUGGGGaUgUGGG--------ACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77130 0.68 0.638587
Target:  5'- gAGCGCgUCCUcggccagGCGCCgCgucucGGCCGGCAGCc -3'
miRNA:   3'- -UCGUG-GGGA-------UGUGG-Ga----CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77337 0.69 0.5389
Target:  5'- cAGC-UCCUUACGgacgacgagcCCCUGGCCcGCGGCg -3'
miRNA:   3'- -UCGuGGGGAUGU----------GGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77590 0.69 0.578789
Target:  5'- uGGUACCggcggUCgcggGCGuCCCcGGCCAGCAGCg -3'
miRNA:   3'- -UCGUGG-----GGa---UGU-GGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 78136 0.71 0.453204
Target:  5'- cGCGCCUCgcgGCGCaCgaGGCCGGCAu- -3'
miRNA:   3'- uCGUGGGGa--UGUG-GgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 78776 0.76 0.22067
Target:  5'- cGGCGCCCUggACGCCCUGGCgCGG-GGCg -3'
miRNA:   3'- -UCGUGGGGa-UGUGGGACCG-GUCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.