miRNA display CGI


Results 81 - 100 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 124459 0.66 0.720024
Target:  5'- gGGCGCCCCgccgcgGCggggGCCC-GGCC-GUGGCg -3'
miRNA:   3'- -UCGUGGGGa-----UG----UGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 124202 0.67 0.700189
Target:  5'- cGCGCCCgCggcgGCgACCgaGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGG-Ga---UG-UGGgaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 124144 0.72 0.391953
Target:  5'- cGCGCCUC-ACGCgCCUGuGCCGGCAc- -3'
miRNA:   3'- uCGUGGGGaUGUG-GGAC-CGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 123919 0.66 0.720024
Target:  5'- uGGCGCCCgCggu-CCCgGGCCGGCccGGCc -3'
miRNA:   3'- -UCGUGGG-GauguGGGaCCGGUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 121256 0.66 0.720024
Target:  5'- gGGCgucGCCCCggACACCCUgGGUCuGCu-- -3'
miRNA:   3'- -UCG---UGGGGa-UGUGGGA-CCGGuCGuug -5'
21382 5' -59.3 NC_004812.1 + 121186 0.66 0.749198
Target:  5'- cGGcCGCCCagcagcGCGCCCUGGUcgaaCAGCAu- -3'
miRNA:   3'- -UC-GUGGGga----UGUGGGACCG----GUCGUug -5'
21382 5' -59.3 NC_004812.1 + 120718 0.68 0.633504
Target:  5'- gAGgACCCCUGCgggcucuuccaggagGCCuacccccccgCUGcGCCAGCGACc -3'
miRNA:   3'- -UCgUGGGGAUG---------------UGG----------GAC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 120458 0.73 0.335599
Target:  5'- cGCACCCCUGCgccgccacggccaACCCgugGGCCuccCAGCg -3'
miRNA:   3'- uCGUGGGGAUG-------------UGGGa--CCGGuc-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 120352 0.7 0.469782
Target:  5'- cGcCGCCCCUGCaACCCgcgggggcgcgcGGCCGGgGGCg -3'
miRNA:   3'- uC-GUGGGGAUG-UGGGa-----------CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 120048 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 119979 0.66 0.749198
Target:  5'- cGGCGCCCg-GCGCCCUccuCCcGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGAcc-GGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 119515 0.67 0.700189
Target:  5'- cGgGCCgCCggGCGCCCcgGGCCuccGCGACc -3'
miRNA:   3'- uCgUGG-GGa-UGUGGGa-CCGGu--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 119419 0.66 0.710139
Target:  5'- gGGCGCCgCUcC-CCCUGGCCGuGCc-- -3'
miRNA:   3'- -UCGUGGgGAuGuGGGACCGGU-CGuug -5'
21382 5' -59.3 NC_004812.1 + 119341 0.77 0.195187
Target:  5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3'
miRNA:   3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 118075 0.68 0.633504
Target:  5'- cGCGCCCCg--ACCCcGGCCGccgcgcgucuccggcGCGACc -3'
miRNA:   3'- uCGUGGGGaugUGGGaCCGGU---------------CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 118041 0.68 0.619274
Target:  5'- -cCACCCCcGCucccgGCCCgcgGGCCcGCAGCu -3'
miRNA:   3'- ucGUGGGGaUG-----UGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 117610 0.66 0.758732
Target:  5'- cAGCGCCuCCUGCAguccuUCCUGaaGCUGGcCGACa -3'
miRNA:   3'- -UCGUGG-GGAUGU-----GGGAC--CGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 117327 0.74 0.307257
Target:  5'- cGCGCCCCcGgACCCcgGGCCccGGCGGCc -3'
miRNA:   3'- uCGUGGGGaUgUGGGa-CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 117218 0.66 0.717066
Target:  5'- cGCACCgCCaGCugCgggccauucagcagCUGGCCcGCAACg -3'
miRNA:   3'- uCGUGG-GGaUGugG--------------GACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 113634 0.66 0.710139
Target:  5'- gAGCACCCggCUGCGCCCguuCCuGCAGu -3'
miRNA:   3'- -UCGUGGG--GAUGUGGGaccGGuCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.