miRNA display CGI


Results 101 - 120 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 112738 0.69 0.568744
Target:  5'- cGCcUCCCUGCGguucgaCCUGGCCgAGCGAUc -3'
miRNA:   3'- uCGuGGGGAUGUg-----GGACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112653 0.69 0.568744
Target:  5'- cGCACaccgaCCUgcgggACGCCCUGGaCCggAGCGACc -3'
miRNA:   3'- uCGUGg----GGA-----UGUGGGACC-GG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112452 0.72 0.417546
Target:  5'- cGGC-CCCCgaGCGCCCUccGGCCguccGGCGACc -3'
miRNA:   3'- -UCGuGGGGa-UGUGGGA--CCGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112250 0.66 0.720024
Target:  5'- uGCGCCCCgggcACGCCCUuuGCCcGCGc- -3'
miRNA:   3'- uCGUGGGGa---UGUGGGAc-CGGuCGUug -5'
21382 5' -59.3 NC_004812.1 + 112202 0.68 0.619274
Target:  5'- cGGCGCCCCgggcuauccACGCCCcuucGGCcCGGCcgGACg -3'
miRNA:   3'- -UCGUGGGGa--------UGUGGGa---CCG-GUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 111517 0.67 0.690182
Target:  5'- -aCGCCCCc-CGCCCgccGGCCGGCu-- -3'
miRNA:   3'- ucGUGGGGauGUGGGa--CCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 111413 0.68 0.629438
Target:  5'- cGCGCUgCUGCGCUCccgGGCCugGGUGACg -3'
miRNA:   3'- uCGUGGgGAUGUGGGa--CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 111258 0.69 0.529067
Target:  5'- gAGUuuCCCCgcaACCCgGGCCAGCuGCu -3'
miRNA:   3'- -UCGu-GGGGaugUGGGaCCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 111200 0.69 0.529067
Target:  5'- cGCGCCCCUGC-UUC-GGUgGGCGACa -3'
miRNA:   3'- uCGUGGGGAUGuGGGaCCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 109611 0.74 0.321558
Target:  5'- uGGCGCCCCggggGCaggcguucgcaGCCCUGGCgC-GCGACg -3'
miRNA:   3'- -UCGUGGGGa---UG-----------UGGGACCG-GuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 109470 0.69 0.529067
Target:  5'- gAGCGgCCCUGCAgcgaCUUGuucagcagcGCCAGCAGCg -3'
miRNA:   3'- -UCGUgGGGAUGUg---GGAC---------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 109087 0.67 0.690182
Target:  5'- cAGC-CCCCccCG-CCUGGCCGGCcACc -3'
miRNA:   3'- -UCGuGGGGauGUgGGACCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 108902 0.7 0.490455
Target:  5'- uGCACCagCCagUACGCCCgggGGCCcGCGGCc -3'
miRNA:   3'- uCGUGG--GG--AUGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 108887 0.72 0.408902
Target:  5'- cAGCACCCCgcCGCCUcGcGCCGGCcgGGCg -3'
miRNA:   3'- -UCGUGGGGauGUGGGaC-CGGUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 107933 0.67 0.690182
Target:  5'- gAGCGCCCCgaggAgGCC--GGCCAucgcGCGGCg -3'
miRNA:   3'- -UCGUGGGGa---UgUGGgaCCGGU----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 107718 0.71 0.444132
Target:  5'- gAGCACCCC-GCGCUCguagcGGCCGcccGCGGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa----CCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 107037 0.68 0.618258
Target:  5'- cAGCAgCCCC-AgGCCCugcucguacuggaUGGCCAGCGc- -3'
miRNA:   3'- -UCGU-GGGGaUgUGGG-------------ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 106708 0.72 0.408902
Target:  5'- cGgGCCCCgggGgGCCCUcggGGUCGGCGGCg -3'
miRNA:   3'- uCgUGGGGa--UgUGGGA---CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105717 0.66 0.758732
Target:  5'- cGGgGCCCCgaACACCggGGCCGGgGGg -3'
miRNA:   3'- -UCgUGGGGa-UGUGGgaCCGGUCgUUg -5'
21382 5' -59.3 NC_004812.1 + 105217 0.73 0.354749
Target:  5'- cGgGCCCCgggcucuucgaaggACACCCgGGCgGGCGACg -3'
miRNA:   3'- uCgUGGGGa-------------UGUGGGaCCGgUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.