miRNA display CGI


Results 121 - 140 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 105079 0.72 0.40037
Target:  5'- uGGCcCCCCgGCGCCgCUGcGCCGGgGGCg -3'
miRNA:   3'- -UCGuGGGGaUGUGG-GAC-CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 105008 0.67 0.659909
Target:  5'- cGGCGCCCCUcGCGCCCcgcGGugccgacugacCCGGCGc- -3'
miRNA:   3'- -UCGUGGGGA-UGUGGGa--CC-----------GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 104450 0.67 0.659909
Target:  5'- gAGCGCCCUgcugaGCGCCaaGGUCAcCAACa -3'
miRNA:   3'- -UCGUGGGGa----UGUGGgaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 104148 0.67 0.659909
Target:  5'- --aACCCCUucgGgGCCCUGGCCgucgGGCuGCu -3'
miRNA:   3'- ucgUGGGGA---UgUGGGACCGG----UCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 103923 0.68 0.629438
Target:  5'- gGGCugCUggaCUACACCgaGGuCCAGCGccGCa -3'
miRNA:   3'- -UCGugGG---GAUGUGGgaCC-GGUCGU--UG- -5'
21382 5' -59.3 NC_004812.1 + 103604 0.72 0.374656
Target:  5'- cGCGCCCCgggACGugcuacagccgccCCCUGGUCAGCuuCc -3'
miRNA:   3'- uCGUGGGGa--UGU-------------GGGACCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 103542 0.68 0.60912
Target:  5'- gGGCGgCCCUugaGCGCcgCCUGGCgGuGCAGCu -3'
miRNA:   3'- -UCGUgGGGA---UGUG--GGACCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 103064 0.66 0.758732
Target:  5'- gAGCACCUCgGCGCCCUcGGauCCGG-AGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGA-CC--GGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 102899 0.67 0.670033
Target:  5'- gGGCGCCCaaGCGCCCcucGGUCuGCAc- -3'
miRNA:   3'- -UCGUGGGgaUGUGGGa--CCGGuCGUug -5'
21382 5' -59.3 NC_004812.1 + 102242 0.7 0.509608
Target:  5'- cGGCccuGCCCCggaACACCUggGGUCGGCGAg -3'
miRNA:   3'- -UCG---UGGGGa--UGUGGGa-CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 102215 0.68 0.603036
Target:  5'- gAGCAgCCCCggccgugcccgcggGCGCCCgacGGCCAG-AACu -3'
miRNA:   3'- -UCGU-GGGGa-------------UGUGGGa--CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 101589 0.67 0.670033
Target:  5'- aGGCACgCCggguUACCCaUGGCCAG-GGCg -3'
miRNA:   3'- -UCGUGgGGau--GUGGG-ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 101154 0.67 0.649763
Target:  5'- uGCGCUUCUGCgACCUgacGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGGAUG-UGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 99706 0.73 0.359458
Target:  5'- cGGCGgCgCCUGCGCCCagGGCUGGCcGCa -3'
miRNA:   3'- -UCGUgG-GGAUGUGGGa-CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 98937 0.66 0.762515
Target:  5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3'
miRNA:   3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 98748 0.7 0.509608
Target:  5'- -uCACCgCCcGCGCCCUGGagcgCGGCGGCg -3'
miRNA:   3'- ucGUGG-GGaUGUGGGACCg---GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 97440 0.72 0.383652
Target:  5'- cGGCAUCaaggccugCCUGCGCCCgucggacgGcGCCAGCGGCa -3'
miRNA:   3'- -UCGUGG--------GGAUGUGGGa-------C-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96999 0.66 0.749198
Target:  5'- -cCACCCCcACGCCCUcuaGcGCC-GCGACc -3'
miRNA:   3'- ucGUGGGGaUGUGGGA---C-CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96650 0.72 0.383652
Target:  5'- cGGCGCCgCgcgAC-CCCgugGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGgGa--UGuGGGa--CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 96479 0.68 0.639603
Target:  5'- cGGC-CCCCgcggaggACGCCgccGCCAGCGGCg -3'
miRNA:   3'- -UCGuGGGGa------UGUGGgacCGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.