miRNA display CGI


Results 141 - 160 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 96370 0.71 0.426301
Target:  5'- gAGCGCCgCCUGgcguCGgUCaUGGCCGGCGACg -3'
miRNA:   3'- -UCGUGG-GGAU----GUgGG-ACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96281 0.66 0.717066
Target:  5'- uGGCGCCCCcgcgcaaccucaccUGCGaguucaCCUGGCaccGCGACu -3'
miRNA:   3'- -UCGUGGGG--------------AUGUg-----GGACCGgu-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96114 0.68 0.618258
Target:  5'- -cUACCCCcgUccguucuucaaccGCGCCCUGGCCGGCc-- -3'
miRNA:   3'- ucGUGGGG--A-------------UGUGGGACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 95844 0.66 0.749198
Target:  5'- cAGCGCCCCcaaccGgACCgaGGCgCGGguGCg -3'
miRNA:   3'- -UCGUGGGGa----UgUGGgaCCG-GUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 95775 0.68 0.60912
Target:  5'- cGCGCCUCUgcgagcGCGCCC--GCCGGCAGu -3'
miRNA:   3'- uCGUGGGGA------UGUGGGacCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 95590 0.68 0.629438
Target:  5'- cGCGCCC--GCGCgCgGGCgCGGCAGCa -3'
miRNA:   3'- uCGUGGGgaUGUGgGaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 94465 0.67 0.680127
Target:  5'- cGUuUCCCUggGCGCCCUcGCCGGCGGu -3'
miRNA:   3'- uCGuGGGGA--UGUGGGAcCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 94357 0.68 0.60912
Target:  5'- cGGCgcgGCCCCgGCgcgcugguuuGCCCUGGC-GGCGGCg -3'
miRNA:   3'- -UCG---UGGGGaUG----------UGGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 94082 0.7 0.475377
Target:  5'- gGGaACCCCUgccgcccgcucgcguGCGCCCUGGCCcuGguGCg -3'
miRNA:   3'- -UCgUGGGGA---------------UGUGGGACCGGu-CguUG- -5'
21382 5' -59.3 NC_004812.1 + 92563 0.66 0.710139
Target:  5'- cGGCACggCCCgugGCcgucguCgCCUGGCUGGCGGCg -3'
miRNA:   3'- -UCGUG--GGGa--UGu-----G-GGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 92505 0.66 0.749198
Target:  5'- cGGCGgCCCgGCuuCCggGGuCCGGCGACg -3'
miRNA:   3'- -UCGUgGGGaUGugGGa-CC-GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 92405 0.69 0.578789
Target:  5'- gAGCACCUUgGCGCCCUGguaucccacguGCCGGCc-- -3'
miRNA:   3'- -UCGUGGGGaUGUGGGAC-----------CGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 91314 0.67 0.670033
Target:  5'- gGGCACCUgguCGCggcgGGCCAGCAGCu -3'
miRNA:   3'- -UCGUGGGgauGUGgga-CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 90706 0.67 0.670033
Target:  5'- cAGCACCCacggGC-CCCUGcGCUugggGGCGAUg -3'
miRNA:   3'- -UCGUGGGga--UGuGGGAC-CGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 90193 0.71 0.426301
Target:  5'- cGCugCCCUucgaccuggagcGCACCgUGGCCGaCAACu -3'
miRNA:   3'- uCGugGGGA------------UGUGGgACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89915 0.67 0.653824
Target:  5'- gAGCACaCCCUcaGCACCUauguaugacgacggGGCCcgcgAGCGGCg -3'
miRNA:   3'- -UCGUG-GGGA--UGUGGGa-------------CCGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89724 0.7 0.49999
Target:  5'- gAGCuGCUCCUGCACaaagcccggCUGGCguGCGGCa -3'
miRNA:   3'- -UCG-UGGGGAUGUGg--------GACCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89189 0.68 0.592912
Target:  5'- cGGCACCCCcGCcgucugggagccgggGCCCcGGCUccgcgcGGCGGCg -3'
miRNA:   3'- -UCGUGGGGaUG---------------UGGGaCCGG------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89026 0.7 0.509608
Target:  5'- cGCGCCUguuggaCUGCACCgagGGCCGGCGugGCg -3'
miRNA:   3'- uCGUGGG------GAUGUGGga-CCGGUCGU--UG- -5'
21382 5' -59.3 NC_004812.1 + 88975 0.7 0.471643
Target:  5'- aGGgGCCCCaGCcguCCCUGGCCA-CGGCc -3'
miRNA:   3'- -UCgUGGGGaUGu--GGGACCGGUcGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.