miRNA display CGI


Results 61 - 80 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 96650 0.72 0.383652
Target:  5'- cGGCGCCgCgcgAC-CCCgugGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGgGa--UGuGGGa--CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 97440 0.72 0.383652
Target:  5'- cGGCAUCaaggccugCCUGCGCCCgucggacgGcGCCAGCGGCa -3'
miRNA:   3'- -UCGUGG--------GGAUGUGGGa-------C-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 17527 0.71 0.462375
Target:  5'- cGGCuCCCCgUGCaACCCagGGCCAGCcuCg -3'
miRNA:   3'- -UCGuGGGG-AUG-UGGGa-CCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 94082 0.7 0.475377
Target:  5'- gGGaACCCCUgccgcccgcucgcguGCGCCCUGGCCcuGguGCg -3'
miRNA:   3'- -UCgUGGGGA---------------UGUGGGACCGGu-CguUG- -5'
21382 5' -59.3 NC_004812.1 + 12973 0.7 0.481004
Target:  5'- cGGCGCUCC-GCGCCCggGGCCGcGCucGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa-CCGGU-CGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 108902 0.7 0.490455
Target:  5'- uGCACCagCCagUACGCCCgggGGCCcGCGGCc -3'
miRNA:   3'- uCGUGG--GG--AUGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76201 0.7 0.49999
Target:  5'- cGGguCCCCggcggaGCCCUcGGCguGCAGCa -3'
miRNA:   3'- -UCguGGGGaug---UGGGA-CCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3846 0.7 0.49999
Target:  5'- cGCcCCUCUGCGCCgUGGUCGccGCGGCc -3'
miRNA:   3'- uCGuGGGGAUGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4200 0.7 0.49999
Target:  5'- gGGCGCCCCcgcgGCGCCC-GGCCccacGCGc- -3'
miRNA:   3'- -UCGUGGGGa---UGUGGGaCCGGu---CGUug -5'
21382 5' -59.3 NC_004812.1 + 153979 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 15987 0.71 0.462375
Target:  5'- cGGCgccgACCCCgcgGCCCcGcGCCAGCAGCa -3'
miRNA:   3'- -UCG----UGGGGaugUGGGaC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 58070 0.71 0.453204
Target:  5'- cGGCGCCCg-GCGCCgaGGCCGcGCAcACg -3'
miRNA:   3'- -UCGUGGGgaUGUGGgaCCGGU-CGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 13086 0.72 0.40037
Target:  5'- cAGCGCCCCcaugcgcucgUACGCCCgGGCCcGCcuCg -3'
miRNA:   3'- -UCGUGGGG----------AUGUGGGaCCGGuCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 67609 0.72 0.408902
Target:  5'- cGCACUCCUuccaguucaucaGgGCCgUGGCCAGgGACg -3'
miRNA:   3'- uCGUGGGGA------------UgUGGgACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 79377 0.72 0.408902
Target:  5'- cAGCGCCCC-ACACCCccGcGUCGGCcGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa-C-CGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 6307 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112452 0.72 0.417546
Target:  5'- cGGC-CCCCgaGCGCCCUccGGCCguccGGCGACc -3'
miRNA:   3'- -UCGuGGGGa-UGUGGGA--CCGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142173 0.72 0.417546
Target:  5'- gGGCGCCaUCguugGCGCgCUGGCCGGCGc- -3'
miRNA:   3'- -UCGUGG-GGa---UGUGgGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 151809 0.71 0.431606
Target:  5'- gGGCGCCuUCUACGCCCgcuaccgcgacggGuacGCCAGCGGCg -3'
miRNA:   3'- -UCGUGG-GGAUGUGGGa------------C---CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16168 0.71 0.435164
Target:  5'- cGGCGCgCCCgacuggggGCGCUCgaucGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGa-------UGUGGGac--CGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.