miRNA display CGI


Results 101 - 120 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 14783 0.69 0.5389
Target:  5'- cGCGuCCCCgccgacccGCGCCaUGGCCgAGCGGCa -3'
miRNA:   3'- uCGU-GGGGa-------UGUGGgACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 68194 0.69 0.5389
Target:  5'- gGGCGCgCCggACGCCC-GGCCGcgcGCGGCc -3'
miRNA:   3'- -UCGUGgGGa-UGUGGGaCCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76053 0.69 0.5389
Target:  5'- cGGCGgCCCaGCGCUCgcGGCCGGCGcggGCg -3'
miRNA:   3'- -UCGUgGGGaUGUGGGa-CCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 74651 0.69 0.546811
Target:  5'- cGGCgcucuugGCCCCgaugGCGCCCugguacuUGGCCGGgAGCc -3'
miRNA:   3'- -UCG-------UGGGGa---UGUGGG-------ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 75368 0.69 0.558744
Target:  5'- gAGCGCCCCgacGCACgC-GGCCAG-GGCg -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 124972 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 65073 0.69 0.529067
Target:  5'- cGGCgGCCgCCgcCGCCCUGGCCGcGCGc- -3'
miRNA:   3'- -UCG-UGG-GGauGUGGGACCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 17527 0.71 0.462375
Target:  5'- cGGCuCCCCgUGCaACCCagGGCCAGCcuCg -3'
miRNA:   3'- -UCGuGGGG-AUG-UGGGa-CCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 94082 0.7 0.475377
Target:  5'- gGGaACCCCUgccgcccgcucgcguGCGCCCUGGCCcuGguGCg -3'
miRNA:   3'- -UCgUGGGGA---------------UGUGGGACCGGu-CguUG- -5'
21382 5' -59.3 NC_004812.1 + 12973 0.7 0.481004
Target:  5'- cGGCGCUCC-GCGCCCggGGCCGcGCucGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa-CCGGU-CGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 108902 0.7 0.490455
Target:  5'- uGCACCagCCagUACGCCCgggGGCCcGCGGCc -3'
miRNA:   3'- uCGUGG--GG--AUGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76201 0.7 0.49999
Target:  5'- cGGguCCCCggcggaGCCCUcGGCguGCAGCa -3'
miRNA:   3'- -UCguGGGGaug---UGGGA-CCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3846 0.7 0.49999
Target:  5'- cGCcCCUCUGCGCCgUGGUCGccGCGGCc -3'
miRNA:   3'- uCGuGGGGAUGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4200 0.7 0.49999
Target:  5'- gGGCGCCCCcgcgGCGCCC-GGCCccacGCGc- -3'
miRNA:   3'- -UCGUGGGGa---UGUGGGaCCGGu---CGUug -5'
21382 5' -59.3 NC_004812.1 + 153979 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 143292 0.7 0.509608
Target:  5'- cGCACCCCcgAC-CCCcGGCgCGGCGGa -3'
miRNA:   3'- uCGUGGGGa-UGuGGGaCCG-GUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 147626 0.7 0.509608
Target:  5'- uGGCGCCUCUGCGCgCCagUGGgC-GCGACg -3'
miRNA:   3'- -UCGUGGGGAUGUG-GG--ACCgGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 11044 0.7 0.509608
Target:  5'- gGGCGCCgCCggugGCGCCCgaccccgGGaCCAGCGc- -3'
miRNA:   3'- -UCGUGG-GGa---UGUGGGa------CC-GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 102242 0.7 0.509608
Target:  5'- cGGCccuGCCCCggaACACCUggGGUCGGCGAg -3'
miRNA:   3'- -UCG---UGGGGa--UGUGGGa-CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 3349 0.7 0.519302
Target:  5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3'
miRNA:   3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.