miRNA display CGI


Results 121 - 140 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 152201 0.68 0.60912
Target:  5'- cGCACCUgggCUACGCCaUGGCCGcCGGCc -3'
miRNA:   3'- uCGUGGG---GAUGUGGgACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 47697 0.68 0.60912
Target:  5'- gGGCGauuaCCCgacccggGCGCCC-GGCCGGCGc- -3'
miRNA:   3'- -UCGUg---GGGa------UGUGGGaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 65501 0.69 0.5389
Target:  5'- aAGCgACCCC-ACGgCCggcaGGCCGGCGAg -3'
miRNA:   3'- -UCG-UGGGGaUGUgGGa---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 61985 0.69 0.5389
Target:  5'- cGCGCCCgUcucuccGCGCCCaggGGCC-GCGGCu -3'
miRNA:   3'- uCGUGGGgA------UGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28546 0.69 0.5389
Target:  5'- gAGCGgCCCgaccucggGCGCCgCgauguucGGCCGGCAGCu -3'
miRNA:   3'- -UCGUgGGGa-------UGUGG-Ga------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4200 0.7 0.49999
Target:  5'- gGGCGCCCCcgcgGCGCCC-GGCCccacGCGc- -3'
miRNA:   3'- -UCGUGGGGa---UGUGGGaCCGGu---CGUug -5'
21382 5' -59.3 NC_004812.1 + 153979 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 143292 0.7 0.509608
Target:  5'- cGCACCCCcgAC-CCCcGGCgCGGCGGa -3'
miRNA:   3'- uCGUGGGGa-UGuGGGaCCG-GUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 147626 0.7 0.509608
Target:  5'- uGGCGCCUCUGCGCgCCagUGGgC-GCGACg -3'
miRNA:   3'- -UCGUGGGGAUGUG-GG--ACCgGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 11044 0.7 0.509608
Target:  5'- gGGCGCCgCCggugGCGCCCgaccccgGGaCCAGCGc- -3'
miRNA:   3'- -UCGUGG-GGa---UGUGGGa------CC-GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 102242 0.7 0.509608
Target:  5'- cGGCccuGCCCCggaACACCUggGGUCGGCGAg -3'
miRNA:   3'- -UCG---UGGGGa--UGUGGGa-CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 3349 0.7 0.519302
Target:  5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3'
miRNA:   3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 94357 0.68 0.60912
Target:  5'- cGGCgcgGCCCCgGCgcgcugguuuGCCCUGGC-GGCGGCg -3'
miRNA:   3'- -UCG---UGGGGaUG----------UGGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 65073 0.69 0.529067
Target:  5'- cGGCgGCCgCCgcCGCCCUGGCCGcGCGc- -3'
miRNA:   3'- -UCG-UGG-GGauGUGGGACCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 124972 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 8258 0.69 0.529067
Target:  5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3'
miRNA:   3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 126184 0.69 0.532992
Target:  5'- cGCACCCCgGCGCUCccgcGGCCcggccuccucggcgcGGCAGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGa---CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66324 0.69 0.536928
Target:  5'- aGGCGCCCgU-CGCCCgcgcugcaggcgGGgCAGCAGCc -3'
miRNA:   3'- -UCGUGGGgAuGUGGGa-----------CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54424 0.69 0.5389
Target:  5'- uGCACCaCCgugGCGCC--GGUCGGCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGgaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77337 0.69 0.5389
Target:  5'- cAGC-UCCUUACGgacgacgagcCCCUGGCCcGCGGCg -3'
miRNA:   3'- -UCGuGGGGAUGU----------GGGACCGGuCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.