Results 141 - 160 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 5' | -59.3 | NC_004812.1 | + | 130382 | 0.69 | 0.568744 |
Target: 5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3' miRNA: 3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 120048 | 0.69 | 0.568744 |
Target: 5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3' miRNA: 3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 66324 | 0.69 | 0.536928 |
Target: 5'- aGGCGCCCgU-CGCCCgcgcugcaggcgGGgCAGCAGCc -3' miRNA: 3'- -UCGUGGGgAuGUGGGa-----------CCgGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 126184 | 0.69 | 0.532992 |
Target: 5'- cGCACCCCgGCGCUCccgcGGCCcggccuccucggcgcGGCAGCc -3' miRNA: 3'- uCGUGGGGaUGUGGGa---CCGG---------------UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 8258 | 0.69 | 0.529067 |
Target: 5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3' miRNA: 3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 124972 | 0.69 | 0.529067 |
Target: 5'- cGCGCCgCCccCACCCccGCCGGCGACc -3' miRNA: 3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 65073 | 0.69 | 0.529067 |
Target: 5'- cGGCgGCCgCCgcCGCCCUGGCCGcGCGc- -3' miRNA: 3'- -UCG-UGG-GGauGUGGGACCGGU-CGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 3349 | 0.7 | 0.519302 |
Target: 5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3' miRNA: 3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 102242 | 0.7 | 0.509608 |
Target: 5'- cGGCccuGCCCCggaACACCUggGGUCGGCGAg -3' miRNA: 3'- -UCG---UGGGGa--UGUGGGa-CCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 11044 | 0.7 | 0.509608 |
Target: 5'- gGGCGCCgCCggugGCGCCCgaccccgGGaCCAGCGc- -3' miRNA: 3'- -UCGUGG-GGa---UGUGGGa------CC-GGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 54424 | 0.69 | 0.5389 |
Target: 5'- uGCACCaCCgugGCGCC--GGUCGGCGGCg -3' miRNA: 3'- uCGUGG-GGa--UGUGGgaCCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 77337 | 0.69 | 0.5389 |
Target: 5'- cAGC-UCCUUACGgacgacgagcCCCUGGCCcGCGGCg -3' miRNA: 3'- -UCGuGGGGAUGU----------GGGACCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 75368 | 0.69 | 0.558744 |
Target: 5'- gAGCGCCCCgacGCACgC-GGCCAG-GGCg -3' miRNA: 3'- -UCGUGGGGa--UGUGgGaCCGGUCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 74651 | 0.69 | 0.546811 |
Target: 5'- cGGCgcucuugGCCCCgaugGCGCCCugguacuUGGCCGGgAGCc -3' miRNA: 3'- -UCG-------UGGGGa---UGUGGG-------ACCGGUCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 76053 | 0.69 | 0.5389 |
Target: 5'- cGGCGgCCCaGCGCUCgcGGCCGGCGcggGCg -3' miRNA: 3'- -UCGUgGGGaUGUGGGa-CCGGUCGU---UG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 68194 | 0.69 | 0.5389 |
Target: 5'- gGGCGCgCCggACGCCC-GGCCGcgcGCGGCc -3' miRNA: 3'- -UCGUGgGGa-UGUGGGaCCGGU---CGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 14783 | 0.69 | 0.5389 |
Target: 5'- cGCGuCCCCgccgacccGCGCCaUGGCCgAGCGGCa -3' miRNA: 3'- uCGU-GGGGa-------UGUGGgACCGG-UCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 65501 | 0.69 | 0.5389 |
Target: 5'- aAGCgACCCC-ACGgCCggcaGGCCGGCGAg -3' miRNA: 3'- -UCG-UGGGGaUGUgGGa---CCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 61985 | 0.69 | 0.5389 |
Target: 5'- cGCGCCCgUcucuccGCGCCCaggGGCC-GCGGCu -3' miRNA: 3'- uCGUGGGgA------UGUGGGa--CCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 28546 | 0.69 | 0.5389 |
Target: 5'- gAGCGgCCCgaccucggGCGCCgCgauguucGGCCGGCAGCu -3' miRNA: 3'- -UCGUgGGGa-------UGUGG-Ga------CCGGUCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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