miRNA display CGI


Results 161 - 180 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 126184 0.69 0.532992
Target:  5'- cGCACCCCgGCGCUCccgcGGCCcggccuccucggcgcGGCAGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGa---CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 8258 0.69 0.529067
Target:  5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3'
miRNA:   3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 124972 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 65073 0.69 0.529067
Target:  5'- cGGCgGCCgCCgcCGCCCUGGCCGcGCGc- -3'
miRNA:   3'- -UCG-UGG-GGauGUGGGACCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 65501 0.69 0.5389
Target:  5'- aAGCgACCCC-ACGgCCggcaGGCCGGCGAg -3'
miRNA:   3'- -UCG-UGGGGaUGUgGGa---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 14783 0.69 0.5389
Target:  5'- cGCGuCCCCgccgacccGCGCCaUGGCCgAGCGGCa -3'
miRNA:   3'- uCGU-GGGGa-------UGUGGgACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 21956 0.68 0.588871
Target:  5'- gAGCGCCuCCUGCAggaccUCCgGGCcCAGCcGCu -3'
miRNA:   3'- -UCGUGG-GGAUGU-----GGGaCCG-GUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 133109 0.69 0.578789
Target:  5'- cGGCGCCgCC-GCGCCC-GGCCcGCcGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGaCCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 77590 0.69 0.578789
Target:  5'- uGGUACCggcggUCgcggGCGuCCCcGGCCAGCAGCg -3'
miRNA:   3'- -UCGUGG-----GGa---UGU-GGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 130382 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 120048 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 75368 0.69 0.558744
Target:  5'- gAGCGCCCCgacGCACgC-GGCCAG-GGCg -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 74651 0.69 0.546811
Target:  5'- cGGCgcucuugGCCCCgaugGCGCCCugguacuUGGCCGGgAGCc -3'
miRNA:   3'- -UCG-------UGGGGa---UGUGGG-------ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 76053 0.69 0.5389
Target:  5'- cGGCGgCCCaGCGCUCgcGGCCGGCGcggGCg -3'
miRNA:   3'- -UCGUgGGGaUGUGGGa-CCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 68194 0.69 0.5389
Target:  5'- gGGCGCgCCggACGCCC-GGCCGcgcGCGGCc -3'
miRNA:   3'- -UCGUGgGGa-UGUGGGaCCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 78776 0.76 0.22067
Target:  5'- cGGCGCCCUggACGCCCUGGCgCGG-GGCg -3'
miRNA:   3'- -UCGUGGGGa-UGUGGGACCG-GUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 55396 0.76 0.215882
Target:  5'- cGGCGCCCCUGCuggcggccgcggggcCCCUGGCCccGCAGa -3'
miRNA:   3'- -UCGUGGGGAUGu--------------GGGACCGGu-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 150242 0.77 0.195187
Target:  5'- cGCugCCC-GCGuCCCUGGCgGGCGGCg -3'
miRNA:   3'- uCGugGGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 38948 0.81 0.114444
Target:  5'- cGGCACCCCccgGCGCCCggccGGCCcGCGACc -3'
miRNA:   3'- -UCGUGGGGa--UGUGGGa---CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 98937 0.66 0.762515
Target:  5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3'
miRNA:   3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.