miRNA display CGI


Results 81 - 100 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 98748 0.7 0.509608
Target:  5'- -uCACCgCCcGCGCCCUGGagcgCGGCGGCg -3'
miRNA:   3'- ucGUGG-GGaUGUGGGACCg---GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 135275 0.7 0.519302
Target:  5'- aAGCACUaCUucgagcgguGCACCCUGGCCuGCcuGGCa -3'
miRNA:   3'- -UCGUGGgGA---------UGUGGGACCGGuCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 109470 0.69 0.529067
Target:  5'- gAGCGgCCCUGCAgcgaCUUGuucagcagcGCCAGCAGCg -3'
miRNA:   3'- -UCGUgGGGAUGUg---GGAC---------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 39159 0.69 0.529067
Target:  5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3'
miRNA:   3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 50031 0.69 0.5389
Target:  5'- cGCGCCgUCUGCGCCC-GGCCcgGGCGc- -3'
miRNA:   3'- uCGUGG-GGAUGUGGGaCCGG--UCGUug -5'
21382 5' -59.3 NC_004812.1 + 112738 0.69 0.568744
Target:  5'- cGCcUCCCUGCGguucgaCCUGGCCgAGCGAUc -3'
miRNA:   3'- uCGuGGGGAUGUg-----GGACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4874 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 96370 0.71 0.426301
Target:  5'- gAGCGCCgCCUGgcguCGgUCaUGGCCGGCGACg -3'
miRNA:   3'- -UCGUGG-GGAU----GUgGG-ACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 37208 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105079 0.72 0.40037
Target:  5'- uGGCcCCCCgGCGCCgCUGcGCCGGgGGCg -3'
miRNA:   3'- -UCGuGGGGaUGUGG-GAC-CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 88631 0.68 0.598983
Target:  5'- cGGCGCCCCagUGCGCC---GCCGGCAu- -3'
miRNA:   3'- -UCGUGGGG--AUGUGGgacCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 47849 0.68 0.60912
Target:  5'- aGGuCGCCCCcGCGCCCcccaGCC-GCAGCg -3'
miRNA:   3'- -UC-GUGGGGaUGUGGGac--CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 133463 0.68 0.60912
Target:  5'- gGGCGCUg--ACGCUgUGcGCCAGCAGCa -3'
miRNA:   3'- -UCGUGGggaUGUGGgAC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 107037 0.68 0.618258
Target:  5'- cAGCAgCCCC-AgGCCCugcucguacuggaUGGCCAGCGc- -3'
miRNA:   3'- -UCGU-GGGGaUgUGGG-------------ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 71334 0.68 0.619274
Target:  5'- uGGgGCCCgCUGCACaCCgcggugacgcUGGCCAGCu-- -3'
miRNA:   3'- -UCgUGGG-GAUGUG-GG----------ACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 85126 0.76 0.226095
Target:  5'- uGCuGCCCCUGCugcCCCUGcGCCcGCAGCa -3'
miRNA:   3'- uCG-UGGGGAUGu--GGGAC-CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 148228 0.74 0.307257
Target:  5'- cGCGCCCCcGgACCCcgGGCCccGGCGGCc -3'
miRNA:   3'- uCGUGGGGaUgUGGGa-CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 88920 0.73 0.359458
Target:  5'- cGCGCCCUgcucggaACCCUGGCCgccGGUGGCg -3'
miRNA:   3'- uCGUGGGGaug----UGGGACCGG---UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 8150 0.72 0.375468
Target:  5'- cGCACCCCU-CGCCCcgagcgGGCgAGgGACu -3'
miRNA:   3'- uCGUGGGGAuGUGGGa-----CCGgUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 124144 0.72 0.391953
Target:  5'- cGCGCCUC-ACGCgCCUGuGCCGGCAc- -3'
miRNA:   3'- uCGUGGGGaUGUG-GGAC-CGGUCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.