miRNA display CGI


Results 121 - 140 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 126327 0.72 0.391953
Target:  5'- aGGgACCCCUcggcgugcuGCGCCCUGGgcCCGGgGGCg -3'
miRNA:   3'- -UCgUGGGGA---------UGUGGGACC--GGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 108887 0.72 0.408902
Target:  5'- cAGCACCCCgcCGCCUcGcGCCGGCcgGGCg -3'
miRNA:   3'- -UCGUGGGGauGUGGGaC-CGGUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 111413 0.68 0.629438
Target:  5'- cGCGCUgCUGCGCUCccgGGCCugGGUGACg -3'
miRNA:   3'- uCGUGGgGAUGUGGGa--CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 83544 0.68 0.619274
Target:  5'- gGGCGCCCCcguCGUCgUGGCCcugcGCAGCg -3'
miRNA:   3'- -UCGUGGGGau-GUGGgACCGGu---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 57490 0.68 0.619274
Target:  5'- --gGCCaCCUGCGggUCCUGGCCGGCc-- -3'
miRNA:   3'- ucgUGG-GGAUGU--GGGACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 136018 0.71 0.462375
Target:  5'- gGGCGCCCC---GCCCgcggGGCCAuCGGCg -3'
miRNA:   3'- -UCGUGGGGaugUGGGa---CCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28471 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 58168 0.7 0.49999
Target:  5'- gGGCGCCCCcGCGCCUgccGCCccGCGGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGac-CGGu-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 9001 0.7 0.519302
Target:  5'- aGGCGCCaagCUGagGCCCcgGGCCAGCAu- -3'
miRNA:   3'- -UCGUGGg--GAUg-UGGGa-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 34250 0.7 0.519302
Target:  5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3'
miRNA:   3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 155873 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66777 0.69 0.5389
Target:  5'- cGCACgCCUGCACCCgcgccuCCAGCcACu -3'
miRNA:   3'- uCGUGgGGAUGUGGGacc---GGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 47008 0.69 0.558744
Target:  5'- uGC-CCCCgggGCGCCaUGGCCacccgauagacgGGCAGCg -3'
miRNA:   3'- uCGuGGGGa--UGUGGgACCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112738 0.69 0.568744
Target:  5'- cGCcUCCCUGCGguucgaCCUGGCCgAGCGAUc -3'
miRNA:   3'- uCGuGGGGAUGUg-----GGACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 79851 0.69 0.578789
Target:  5'- gGGgGCCCUggaGCACCCgacGGCCgacacGGCGGCc -3'
miRNA:   3'- -UCgUGGGGa--UGUGGGa--CCGG-----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 145095 0.69 0.578789
Target:  5'- cAGCugaGCCCCacgcUGgGCUUUGGCCAGCAc- -3'
miRNA:   3'- -UCG---UGGGG----AUgUGGGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 88434 0.68 0.598983
Target:  5'- cGCGCCCC--CGCCCgcGGCCGcCGACc -3'
miRNA:   3'- uCGUGGGGauGUGGGa-CCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 139865 0.68 0.598983
Target:  5'- cGGC-CCCCgggGCGCCCUgcgucgacgGGCgAGCGGg -3'
miRNA:   3'- -UCGuGGGGa--UGUGGGA---------CCGgUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 55729 0.68 0.60912
Target:  5'- cGCACCCCgcguuccgggACGCCCUGuucGCCgAGCu-- -3'
miRNA:   3'- uCGUGGGGa---------UGUGGGAC---CGG-UCGuug -5'
21382 5' -59.3 NC_004812.1 + 74969 0.68 0.616227
Target:  5'- gAGC-CUCCUgcugaucagcauguACGCCCUggcGGCCAGgGGCg -3'
miRNA:   3'- -UCGuGGGGA--------------UGUGGGA---CCGGUCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.