miRNA display CGI


Results 141 - 160 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 84806 0.66 0.720024
Target:  5'- cGCcaACCCCcACGCCaCgacGGCuCGGCGACc -3'
miRNA:   3'- uCG--UGGGGaUGUGG-Ga--CCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112250 0.66 0.720024
Target:  5'- uGCGCCCCgggcACGCCCUuuGCCcGCGc- -3'
miRNA:   3'- uCGUGGGGa---UGUGGGAc-CGGuCGUug -5'
21382 5' -59.3 NC_004812.1 + 120718 0.68 0.633504
Target:  5'- gAGgACCCCUGCgggcucuuccaggagGCCuacccccccgCUGcGCCAGCGACc -3'
miRNA:   3'- -UCgUGGGGAUG---------------UGG----------GAC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73010 0.68 0.629438
Target:  5'- cGCACCCacugGCGCCCgcuGCUggAGCGGCu -3'
miRNA:   3'- uCGUGGGga--UGUGGGac-CGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 107037 0.68 0.618258
Target:  5'- cAGCAgCCCC-AgGCCCugcucguacuggaUGGCCAGCGc- -3'
miRNA:   3'- -UCGU-GGGGaUgUGGG-------------ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 74969 0.68 0.616227
Target:  5'- gAGC-CUCCUgcugaucagcauguACGCCCUggcGGCCAGgGGCg -3'
miRNA:   3'- -UCGuGGGGA--------------UGUGGGA---CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 47849 0.68 0.60912
Target:  5'- aGGuCGCCCCcGCGCCCcccaGCC-GCAGCg -3'
miRNA:   3'- -UC-GUGGGGaUGUGGGac--CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 139865 0.68 0.598983
Target:  5'- cGGC-CCCCgggGCGCCCUgcgucgacgGGCgAGCGGg -3'
miRNA:   3'- -UCGuGGGGa--UGUGGGA---------CCGgUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 72856 0.68 0.598983
Target:  5'- gGGCGCgCUgGCGuCCCUGGC-GGCAGCc -3'
miRNA:   3'- -UCGUGgGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89189 0.68 0.592912
Target:  5'- cGGCACCCCcGCcgucugggagccgggGCCCcGGCUccgcgcGGCGGCg -3'
miRNA:   3'- -UCGUGGGGaUG---------------UGGGaCCGG------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 101154 0.67 0.649763
Target:  5'- uGCGCUUCUGCgACCUgacGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGGAUG-UGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 2958 0.67 0.649763
Target:  5'- gAGCACgCCCUgcGCGCCCaGcGCCgagacgucgGGCGGCc -3'
miRNA:   3'- -UCGUG-GGGA--UGUGGGaC-CGG---------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 156155 0.67 0.700189
Target:  5'- aGGCGCgCCgGCgGCCCgGGCUcGCGGCg -3'
miRNA:   3'- -UCGUGgGGaUG-UGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142478 0.67 0.700189
Target:  5'- gGGCGCCCUgACGC---GGCUGGCGGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGggaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 38908 0.67 0.700189
Target:  5'- gGGCGCUCCcGCgACCCggggggcgcgGGCCGGCc-- -3'
miRNA:   3'- -UCGUGGGGaUG-UGGGa---------CCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 9449 0.67 0.700189
Target:  5'- uGCGCCUUcuggUGCugUCUGGCCcacgccGCGACg -3'
miRNA:   3'- uCGUGGGG----AUGugGGACCGGu-----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 126450 0.67 0.690182
Target:  5'- cGGCACCUaggUugGCuCCUGGcCCGGCuGACc -3'
miRNA:   3'- -UCGUGGGg--AugUG-GGACC-GGUCG-UUG- -5'
21382 5' -59.3 NC_004812.1 + 57206 0.67 0.680127
Target:  5'- uGCGCCCCgACgACCCcaGCCGccGCAGCg -3'
miRNA:   3'- uCGUGGGGaUG-UGGGacCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 136213 0.67 0.670033
Target:  5'- cGCACCCaccgccagcuCUACGCCCugcucaUGGCCcacaagcGCGACu -3'
miRNA:   3'- uCGUGGG----------GAUGUGGG------ACCGGu------CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 104450 0.67 0.659909
Target:  5'- gAGCGCCCUgcugaGCGCCaaGGUCAcCAACa -3'
miRNA:   3'- -UCGUGGGGa----UGUGGgaCCGGUcGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.