miRNA display CGI


Results 41 - 60 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 156179 0.66 0.872672
Target:  5'- -cGGCGGgCgCGCG-CGagaGCGCCGcGCGCg -3'
miRNA:   3'- gaCUGCCaG-GCGUaGC---UGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 3580 0.66 0.834784
Target:  5'- -aGGCGG-CgGCggCGGCggGCgGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGuaGCUG--UGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 140640 0.66 0.850505
Target:  5'- -aGACGcG-CCGCcgCG-CGgCGGCGCc -3'
miRNA:   3'- gaCUGC-CaGGCGuaGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 147738 0.66 0.858088
Target:  5'- aUGACgcggGGUCCGCGg-GACGCgGG-GCu -3'
miRNA:   3'- gACUG----CCAGGCGUagCUGUGgCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 8250 0.66 0.872672
Target:  5'- -cGGgGGUCCGCccccGggGGCGCCGGgGg -3'
miRNA:   3'- gaCUgCCAGGCG----UagCUGUGGCCgCg -5'
21383 3' -58.1 NC_004812.1 + 117179 0.66 0.855833
Target:  5'- -gGGCGGUcgCCGCggCGACcgggauaaaaggcaGCCGGCu- -3'
miRNA:   3'- gaCUGCCA--GGCGuaGCUG--------------UGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 22535 0.66 0.857338
Target:  5'- -cGGCGcccCCGCGUcgggaaaCGACACCGGCcCg -3'
miRNA:   3'- gaCUGCca-GGCGUA-------GCUGUGGCCGcG- -5'
21383 3' -58.1 NC_004812.1 + 155487 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 25348 0.66 0.834784
Target:  5'- -cGGCGGUggGCggCGACcacgggcucGCCGGCGUc -3'
miRNA:   3'- gaCUGCCAggCGuaGCUG---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 37586 0.66 0.848965
Target:  5'- -aGACGGgccgguggccgcCCGCGUucaccCGGCAgucCCGGUGCg -3'
miRNA:   3'- gaCUGCCa-----------GGCGUA-----GCUGU---GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 46308 0.66 0.842735
Target:  5'- -cGGCGGgCCGCGcgggCGACAgCCGcCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-GGCcGCG- -5'
21383 3' -58.1 NC_004812.1 + 49254 0.66 0.842735
Target:  5'- -gGGC-GUCCGgGgcCGACuCCGGCGCc -3'
miRNA:   3'- gaCUGcCAGGCgUa-GCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136174 0.66 0.834784
Target:  5'- uUGGC-GUCCGCG--GACGuCCGGgGCa -3'
miRNA:   3'- gACUGcCAGGCGUagCUGU-GGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 141187 0.66 0.834784
Target:  5'- gCUGGCGGUugcgcucgcCCGCGUucCGGCggGCgGGgGCg -3'
miRNA:   3'- -GACUGCCA---------GGCGUA--GCUG--UGgCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 48166 0.66 0.858088
Target:  5'- -gGGCGG-CgGCcgCGGCGCUGGagaaCGCg -3'
miRNA:   3'- gaCUGCCaGgCGuaGCUGUGGCC----GCG- -5'
21383 3' -58.1 NC_004812.1 + 150707 0.66 0.858088
Target:  5'- -cGGCGGcUCCGCc----CGCCGGCGg -3'
miRNA:   3'- gaCUGCC-AGGCGuagcuGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 74633 0.66 0.850505
Target:  5'- -cGACGGcccCCGCccgcUCGGCGCUcuuggccccgauGGCGCc -3'
miRNA:   3'- gaCUGCCa--GGCGu---AGCUGUGG------------CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 19767 0.66 0.834784
Target:  5'- -cGGgGGUCCcagGCGaCGcGCGCCGGgGCg -3'
miRNA:   3'- gaCUgCCAGG---CGUaGC-UGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 15966 0.66 0.849736
Target:  5'- -cGACGGacgccCCGCGgccggCGGCGCCGaccccgcggccccGCGCc -3'
miRNA:   3'- gaCUGCCa----GGCGUa----GCUGUGGC-------------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 93839 0.66 0.833979
Target:  5'- cCUGuuccCGGcugCCGCGUCggaccagGACcCCGGUGCg -3'
miRNA:   3'- -GACu---GCCa--GGCGUAG-------CUGuGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.