miRNA display CGI


Results 81 - 100 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 121895 0.66 0.842735
Target:  5'- -gGGCGGggCCGCA--GGC-CgGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUagCUGuGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 131528 0.66 0.834784
Target:  5'- -cGGCGGcgCCGCcccGUCGAggagccCGCCGccGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCG---UAGCU------GUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 7720 0.66 0.834784
Target:  5'- -cGGCGGgggucUCCGCGccgggCGAgGCCgggGGCGCc -3'
miRNA:   3'- gaCUGCC-----AGGCGUa----GCUgUGG---CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 143082 0.66 0.858088
Target:  5'- -cGACGGgCCGUG-CGAC-CCGGcCGUc -3'
miRNA:   3'- gaCUGCCaGGCGUaGCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 95582 0.66 0.865479
Target:  5'- -cGcACGG-CCGCGccCGcGCGCgGGCGCg -3'
miRNA:   3'- gaC-UGCCaGGCGUa-GC-UGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 146275 0.66 0.865479
Target:  5'- -aGACGG-CCGC--CGAUuuuCUGGUGCg -3'
miRNA:   3'- gaCUGCCaGGCGuaGCUGu--GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 145991 0.66 0.865479
Target:  5'- gCUGuGCGGggUCGCGUauuacaUGACGUCGGCGCu -3'
miRNA:   3'- -GAC-UGCCa-GGCGUA------GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 25348 0.66 0.834784
Target:  5'- -cGGCGGUggGCggCGACcacgggcucGCCGGCGUc -3'
miRNA:   3'- gaCUGCCAggCGuaGCUG---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 61445 0.66 0.834784
Target:  5'- uCUGAgGGcCCGC--CGAgACCGGCcggGCu -3'
miRNA:   3'- -GACUgCCaGGCGuaGCUgUGGCCG---CG- -5'
21383 3' -58.1 NC_004812.1 + 3580 0.66 0.834784
Target:  5'- -aGGCGG-CgGCggCGGCggGCgGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGuaGCUG--UGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 22535 0.66 0.857338
Target:  5'- -cGGCGcccCCGCGUcgggaaaCGACACCGGCcCg -3'
miRNA:   3'- gaCUGCca-GGCGUA-------GCUGUGGCCGcG- -5'
21383 3' -58.1 NC_004812.1 + 117179 0.66 0.855833
Target:  5'- -gGGCGGUcgCCGCggCGACcgggauaaaaggcaGCCGGCu- -3'
miRNA:   3'- gaCUGCCA--GGCGuaGCUG--------------UGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 30962 0.66 0.850505
Target:  5'- -cGAgGGUCagguaCGCcgCGACGuuGGCGg -3'
miRNA:   3'- gaCUgCCAG-----GCGuaGCUGUggCCGCg -5'
21383 3' -58.1 NC_004812.1 + 15966 0.66 0.849736
Target:  5'- -cGACGGacgccCCGCGgccggCGGCGCCGaccccgcggccccGCGCc -3'
miRNA:   3'- gaCUGCCa----GGCGUa----GCUGUGGC-------------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 58191 0.66 0.850505
Target:  5'- --cGCGGccgCCGCAcCGagacGCugCGGCGCc -3'
miRNA:   3'- gacUGCCa--GGCGUaGC----UGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 120903 0.66 0.834784
Target:  5'- -cGGgGGUcgcgucucCCGCAUaaaaGGC-CCGGCGCc -3'
miRNA:   3'- gaCUgCCA--------GGCGUAg---CUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136440 0.66 0.842735
Target:  5'- -aGGCGGcCCGg--CGGCACCGcaggcgaauccGCGCg -3'
miRNA:   3'- gaCUGCCaGGCguaGCUGUGGC-----------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 41960 0.66 0.833979
Target:  5'- gUGGCGGgCCGCAcCGACguccucaucacggGCCaGCGUu -3'
miRNA:   3'- gACUGCCaGGCGUaGCUG-------------UGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 155487 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 29978 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.