miRNA display CGI


Results 101 - 120 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 154941 0.66 0.865479
Target:  5'- -gGGCGGgCCGCGgcgccgCGGCcaacgggggAgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUa-----GCUG---------UgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 80460 0.66 0.834784
Target:  5'- gCUGGgcaaGGUggUCGCggCGACGCggCGGCGCg -3'
miRNA:   3'- -GACUg---CCA--GGCGuaGCUGUG--GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 76522 0.66 0.865479
Target:  5'- -cGACGG-CUGCcugGUCGAgGgCGGgGCg -3'
miRNA:   3'- gaCUGCCaGGCG---UAGCUgUgGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 156179 0.66 0.872672
Target:  5'- -cGGCGGgCgCGCG-CGagaGCGCCGcGCGCg -3'
miRNA:   3'- gaCUGCCaG-GCGUaGC---UGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 134690 0.66 0.865479
Target:  5'- -gGGCGGagCCGC--CGAgcCGCCGGCuGCg -3'
miRNA:   3'- gaCUGCCa-GGCGuaGCU--GUGGCCG-CG- -5'
21383 3' -58.1 NC_004812.1 + 75469 0.66 0.872672
Target:  5'- -gGACGGUCUGCuccgCGGC-CgCGGC-Ca -3'
miRNA:   3'- gaCUGCCAGGCGua--GCUGuG-GCCGcG- -5'
21383 3' -58.1 NC_004812.1 + 105816 0.66 0.850505
Target:  5'- gUGGgGGcUCCGgc-CGGCGgCGGCGCg -3'
miRNA:   3'- gACUgCC-AGGCguaGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 71952 0.66 0.872672
Target:  5'- -gGGCGGcCCuGCcgCGACGCgCGcCGCg -3'
miRNA:   3'- gaCUGCCaGG-CGuaGCUGUG-GCcGCG- -5'
21383 3' -58.1 NC_004812.1 + 81414 0.66 0.872672
Target:  5'- -cGACuGaCCGCGUCGGCcauggcguCCGGgGCc -3'
miRNA:   3'- gaCUGcCaGGCGUAGCUGu-------GGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 59265 0.66 0.850505
Target:  5'- -cGGCGGUgCGCGggaUCaggguCGCgGGCGCg -3'
miRNA:   3'- gaCUGCCAgGCGU---AGcu---GUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 139093 0.66 0.865479
Target:  5'- uUGcACGGggagCCGaaagacgCGGCugggGCCGGCGCg -3'
miRNA:   3'- gAC-UGCCa---GGCgua----GCUG----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 8250 0.66 0.872672
Target:  5'- -cGGgGGUCCGCccccGggGGCGCCGGgGg -3'
miRNA:   3'- gaCUgCCAGGCG----UagCUGUGGCCgCg -5'
21383 3' -58.1 NC_004812.1 + 125238 0.66 0.872672
Target:  5'- -aGGCGcGUgCGCA-CGcaggcGCGCCGGCGg -3'
miRNA:   3'- gaCUGC-CAgGCGUaGC-----UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 148080 0.66 0.855833
Target:  5'- -gGGCGGUcgCCGCggCGACcgggauaaaaggcaGCCGGCu- -3'
miRNA:   3'- gaCUGCCA--GGCGuaGCUG--------------UGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 126931 0.66 0.858088
Target:  5'- cCUGGCGGUUUcUcgCGGCGUCGGCGg -3'
miRNA:   3'- -GACUGCCAGGcGuaGCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 43884 0.66 0.842735
Target:  5'- --cGCGGUUCGCGccCGGCcgcgGCCGGcCGCc -3'
miRNA:   3'- gacUGCCAGGCGUa-GCUG----UGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 13136 0.66 0.850505
Target:  5'- -gGGCGGUggugCCGCcggCGACAgCGacGCGCg -3'
miRNA:   3'- gaCUGCCA----GGCGua-GCUGUgGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 106416 0.66 0.861068
Target:  5'- --aGCGGggggCCGCGgcgcucgaagaucgCGGCGCUGGCGg -3'
miRNA:   3'- gacUGCCa---GGCGUa-------------GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 120304 0.66 0.834784
Target:  5'- gUGuGCGaGUUCGUggCGACGCCGGUcucgGCg -3'
miRNA:   3'- gAC-UGC-CAGGCGuaGCUGUGGCCG----CG- -5'
21383 3' -58.1 NC_004812.1 + 126542 0.66 0.850505
Target:  5'- cCUGugGGagUCCGCcgcCGuCGCCgaGGCGUg -3'
miRNA:   3'- -GACugCC--AGGCGua-GCuGUGG--CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.