miRNA display CGI


Results 81 - 100 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 32213 0.73 0.484407
Target:  5'- -gGGCGGUCCGCGggCGGucCGCgGGCGg -3'
miRNA:   3'- gaCUGCCAGGCGUa-GCU--GUGgCCGCg -5'
21383 3' -58.1 NC_004812.1 + 3922 0.73 0.493678
Target:  5'- -cGGCGGggCCGCGcggCGGCgGCaCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUa--GCUG-UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 32009 0.73 0.484407
Target:  5'- -cGGCGGcCCGgGUCGcuuCGCCGGgGCc -3'
miRNA:   3'- gaCUGCCaGGCgUAGCu--GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 131832 0.73 0.493678
Target:  5'- cCUGAucaucacccCGGUgCGCAUCGACGCCG-CGg -3'
miRNA:   3'- -GACU---------GCCAgGCGUAGCUGUGGCcGCg -5'
21383 3' -58.1 NC_004812.1 + 128169 0.73 0.457112
Target:  5'- --cGCGGcgCUGCGUCGGCGCCuGGCGg -3'
miRNA:   3'- gacUGCCa-GGCGUAGCUGUGG-CCGCg -5'
21383 3' -58.1 NC_004812.1 + 62366 0.73 0.476134
Target:  5'- -cGugGGUCgGCGcgaaccccaggccggCGACGCCGGCGa -3'
miRNA:   3'- gaCugCCAGgCGUa--------------GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 38817 0.73 0.457112
Target:  5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3'
miRNA:   3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 127889 0.73 0.493678
Target:  5'- -cGACGGUCUgGUGUCGGCGCgGG-GCg -3'
miRNA:   3'- gaCUGCCAGG-CGUAGCUGUGgCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 136300 0.73 0.46612
Target:  5'- -gGGCGGUgcCUGCGcgCGcgcuGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA--GGCGUa-GC----UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 129610 0.72 0.550845
Target:  5'- -cGGCGGggCCGUccucccCGGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCa-GGCGua----GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 106502 0.72 0.50303
Target:  5'- -gGGCgcgGGUCCGCGgcgCGggGCGCCGGCGg -3'
miRNA:   3'- gaCUG---CCAGGCGUa--GC--UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 109693 0.72 0.512459
Target:  5'- -gGAUGuGUCCGCcgCGGCGgCGGcCGCc -3'
miRNA:   3'- gaCUGC-CAGGCGuaGCUGUgGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 148279 0.72 0.547933
Target:  5'- uCUGGCGGcuucucggcgcUCCuCGUCGGCGuacgcgcggagcucCCGGCGCa -3'
miRNA:   3'- -GACUGCC-----------AGGcGUAGCUGU--------------GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 65153 0.72 0.541157
Target:  5'- -gGGCGcGUCCuCGUgGACgcccACCGGCGCa -3'
miRNA:   3'- gaCUGC-CAGGcGUAgCUG----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 19909 0.72 0.550845
Target:  5'- -cGGCGGcCCGCGcCGccgccaccGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCaGGCGUaGC--------UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 103561 0.72 0.521959
Target:  5'- cCUGGCGGUgcagCUGCcgCG-UGCUGGCGCg -3'
miRNA:   3'- -GACUGCCA----GGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 156455 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 45 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 156135 0.72 0.531526
Target:  5'- gUGACGGgCCGCGcgGACGCgGGgCGCg -3'
miRNA:   3'- gACUGCCaGGCGUagCUGUGgCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 50258 0.72 0.531526
Target:  5'- cCUGccguCGGUgUCGCuGUCGAC-CCGGCGCc -3'
miRNA:   3'- -GACu---GCCA-GGCG-UAGCUGuGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.