Results 61 - 80 of 550 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21383 | 3' | -58.1 | NC_004812.1 | + | 44183 | 0.74 | 0.438504 |
Target: 5'- -aGcCGGUCUGCGgcggggguggggcUCGGCGgCGGCGCg -3' miRNA: 3'- gaCuGCCAGGCGU-------------AGCUGUgGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 31183 | 0.74 | 0.43938 |
Target: 5'- -gGGCGGUCCGUcguccgcaggGUCGuccCGCUGGUGCu -3' miRNA: 3'- gaCUGCCAGGCG----------UAGCu--GUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 152475 | 0.74 | 0.43938 |
Target: 5'- cCUGGCGG-CCGCccucucCGACgagggccccGCCGGCGCc -3' miRNA: 3'- -GACUGCCaGGCGua----GCUG---------UGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 2008 | 0.74 | 0.43938 |
Target: 5'- -cGGCGGUCgcucgggGCGcCGACGCCGGCGg -3' miRNA: 3'- gaCUGCCAGg------CGUaGCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 82806 | 0.74 | 0.43938 |
Target: 5'- -gGugGGagCGCGg-GGCGCCGGCGCc -3' miRNA: 3'- gaCugCCagGCGUagCUGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 127517 | 0.74 | 0.43938 |
Target: 5'- -cGGCGGUCgcucgggGCGcCGACGCCGGCGg -3' miRNA: 3'- gaCUGCCAGg------CGUaGCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 26966 | 0.74 | 0.43938 |
Target: 5'- cCUGGCGG-CCGCccucucCGACgagggccccGCCGGCGCc -3' miRNA: 3'- -GACUGCCaGGCGua----GCUG---------UGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 43682 | 0.74 | 0.448197 |
Target: 5'- --aGCGGcUCCGCGUUGugGgucgggCCGGCGCa -3' miRNA: 3'- gacUGCC-AGGCGUAGCugU------GGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 3694 | 0.74 | 0.448197 |
Target: 5'- uCUGGaagagcaGGUCgGCGgcggCGGCGCCGGCGg -3' miRNA: 3'- -GACUg------CCAGgCGUa---GCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 129202 | 0.74 | 0.448197 |
Target: 5'- uCUGGaagagcaGGUCgGCGgcggCGGCGCCGGCGg -3' miRNA: 3'- -GACUg------CCAGgCGUa---GCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 128169 | 0.73 | 0.457112 |
Target: 5'- --cGCGGcgCUGCGUCGGCGCCuGGCGg -3' miRNA: 3'- gacUGCCa-GGCGUAGCUGUGG-CCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 137308 | 0.73 | 0.457112 |
Target: 5'- cCUGGgGGcCCGCGuucgcccccUCGACACC-GCGCa -3' miRNA: 3'- -GACUgCCaGGCGU---------AGCUGUGGcCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 7916 | 0.73 | 0.457112 |
Target: 5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3' miRNA: 3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 38817 | 0.73 | 0.457112 |
Target: 5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3' miRNA: 3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 136300 | 0.73 | 0.46612 |
Target: 5'- -gGGCGGUgcCUGCGcgCGcgcuGCGCCGGCGCg -3' miRNA: 3'- gaCUGCCA--GGCGUa-GC----UGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 55158 | 0.73 | 0.47522 |
Target: 5'- gCUGACGG-CC-CAcUCGGUGCCGGCGCc -3' miRNA: 3'- -GACUGCCaGGcGU-AGCUGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 65745 | 0.73 | 0.47522 |
Target: 5'- -aGACGGcgaUCCGCcuccgCGGCGCCGGCu- -3' miRNA: 3'- gaCUGCC---AGGCGua---GCUGUGGCCGcg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 94341 | 0.73 | 0.47522 |
Target: 5'- -cGugGGUCuccgcgCGCGgcgCGGCcCCGGCGCg -3' miRNA: 3'- gaCugCCAG------GCGUa--GCUGuGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 56428 | 0.73 | 0.47522 |
Target: 5'- --uGCGGUCCGCca-GGCGCCGG-GCg -3' miRNA: 3'- gacUGCCAGGCGuagCUGUGGCCgCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 62366 | 0.73 | 0.476134 |
Target: 5'- -cGugGGUCgGCGcgaaccccaggccggCGACGCCGGCGa -3' miRNA: 3'- gaCugCCAGgCGUa--------------GCUGUGGCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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