miRNA display CGI


Results 101 - 120 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 129410 0.72 0.531526
Target:  5'- gCUGACG--CCGCGUCG-CugCGGCGg -3'
miRNA:   3'- -GACUGCcaGGCGUAGCuGugGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 65153 0.72 0.541157
Target:  5'- -gGGCGcGUCCuCGUgGACgcccACCGGCGCa -3'
miRNA:   3'- gaCUGC-CAGGcGUAgCUG----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 100955 0.72 0.541157
Target:  5'- gUGGCGGggcgcgCCGCcgCGgacguccgcgaGCGCCGGCGg -3'
miRNA:   3'- gACUGCCa-----GGCGuaGC-----------UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 43522 0.72 0.541157
Target:  5'- -cGugGGUCCGCcgCGGCGgUGuCGCg -3'
miRNA:   3'- gaCugCCAGGCGuaGCUGUgGCcGCG- -5'
21383 3' -58.1 NC_004812.1 + 146953 0.72 0.545025
Target:  5'- -cGugGGUCCGUccgggcggggugggaGUgGGCGCUGGgGCg -3'
miRNA:   3'- gaCugCCAGGCG---------------UAgCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 148279 0.72 0.547933
Target:  5'- uCUGGCGGcuucucggcgcUCCuCGUCGGCGuacgcgcggagcucCCGGCGCa -3'
miRNA:   3'- -GACUGCC-----------AGGcGUAGCUGU--------------GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 4101 0.72 0.550845
Target:  5'- -cGGCGGggCCGUccucccCGGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCa-GGCGua----GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 19909 0.72 0.550845
Target:  5'- -cGGCGGcCCGCGcCGccgccaccGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCaGGCGUaGC--------UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 129610 0.72 0.550845
Target:  5'- -cGGCGGggCCGUccucccCGGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCa-GGCGua----GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 107350 0.72 0.550845
Target:  5'- uUGACGGcgCCGgaGUCGGCcCCGGaCGCc -3'
miRNA:   3'- gACUGCCa-GGCg-UAGCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 75308 0.72 0.550845
Target:  5'- cCUGGgGGUCUGCGaCG-CGCUGGCGa -3'
miRNA:   3'- -GACUgCCAGGCGUaGCuGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 119965 0.71 0.560585
Target:  5'- cCUGugGGcCUGgG-CGGCGCCcGGCGCc -3'
miRNA:   3'- -GACugCCaGGCgUaGCUGUGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 76988 0.71 0.560585
Target:  5'- -gGGCGGcuuuggCCGCcUCGGCGCgCGcGCGCg -3'
miRNA:   3'- gaCUGCCa-----GGCGuAGCUGUG-GC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 150866 0.71 0.560585
Target:  5'- cCUGugGGcCUGgG-CGGCGCCcGGCGCc -3'
miRNA:   3'- -GACugCCaGGCgUaGCUGUGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 83384 0.71 0.570372
Target:  5'- -cGGCGGUCCGCAg----GCCGGcCGCc -3'
miRNA:   3'- gaCUGCCAGGCGUagcugUGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 140619 0.71 0.570372
Target:  5'- gCUGGCGcGgggCCGCgggGUCGGCgccGCCGGcCGCg -3'
miRNA:   3'- -GACUGC-Ca--GGCG---UAGCUG---UGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 3394 0.71 0.570372
Target:  5'- -gGGCGG-CgGCGgagGGCGCCGGCGUg -3'
miRNA:   3'- gaCUGCCaGgCGUag-CUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 128902 0.71 0.570372
Target:  5'- -gGGCGG-CgGCGgagGGCGCCGGCGUg -3'
miRNA:   3'- gaCUGCCaGgCGUag-CUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27194 0.71 0.570372
Target:  5'- -gGACGGcccgCCGCAgCGACG-CGGCGUc -3'
miRNA:   3'- gaCUGCCa---GGCGUaGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 44032 0.71 0.570372
Target:  5'- -cGGCGG-CCGCG-CGuCACCuGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUaGCuGUGGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.