miRNA display CGI


Results 81 - 100 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 67468 0.66 0.850505
Target:  5'- -cGGCGuGUCCccacGCGUCcGCggGCUGGCGCc -3'
miRNA:   3'- gaCUGC-CAGG----CGUAGcUG--UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 101918 0.66 0.850505
Target:  5'- -cGGCGGUCgGgCcUCggggccccgGACGCgCGGCGCg -3'
miRNA:   3'- gaCUGCCAGgC-GuAG---------CUGUG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 28726 0.66 0.850505
Target:  5'- cCUGGCgcuGGaCCGC---GACGCCGcGCGCg -3'
miRNA:   3'- -GACUG---CCaGGCGuagCUGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 154234 0.66 0.850505
Target:  5'- cCUGGCgcuGGaCCGC---GACGCCGcGCGCg -3'
miRNA:   3'- -GACUG---CCaGGCGuagCUGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 105816 0.66 0.850505
Target:  5'- gUGGgGGcUCCGgc-CGGCGgCGGCGCg -3'
miRNA:   3'- gACUgCC-AGGCguaGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 126542 0.66 0.850505
Target:  5'- cCUGugGGagUCCGCcgcCGuCGCCgaGGCGUg -3'
miRNA:   3'- -GACugCC--AGGCGua-GCuGUGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 102829 0.66 0.850505
Target:  5'- -gGGCGG-CgCGCcUCcACGCCGGCGa -3'
miRNA:   3'- gaCUGCCaG-GCGuAGcUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 15966 0.66 0.849736
Target:  5'- -cGACGGacgccCCGCGgccggCGGCGCCGaccccgcggccccGCGCc -3'
miRNA:   3'- gaCUGCCa----GGCGUa----GCUGUGGC-------------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 37586 0.66 0.848965
Target:  5'- -aGACGGgccgguggccgcCCGCGUucaccCGGCAgucCCGGUGCg -3'
miRNA:   3'- gaCUGCCa-----------GGCGUA-----GCUGU---GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136440 0.66 0.842735
Target:  5'- -aGGCGGcCCGg--CGGCACCGcaggcgaauccGCGCg -3'
miRNA:   3'- gaCUGCCaGGCguaGCUGUGGC-----------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 96203 0.66 0.842735
Target:  5'- ----gGGUCCagacgcGCGUCGACGCgCaGCGCa -3'
miRNA:   3'- gacugCCAGG------CGUAGCUGUG-GcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 141798 0.66 0.842735
Target:  5'- -gGGCGGgCCGCGcgggggugccgcUCGGCcaUGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGU------------AGCUGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 155143 0.66 0.842735
Target:  5'- -cGGCGGggggCCGgGUCGAgGgCGGuCGUg -3'
miRNA:   3'- gaCUGCCa---GGCgUAGCUgUgGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 75905 0.66 0.842735
Target:  5'- uUGGCGuucgCCGCGagGGCcuGCuCGGCGCg -3'
miRNA:   3'- gACUGCca--GGCGUagCUG--UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 155487 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 152796 0.66 0.842735
Target:  5'- -gGGCGGggCCGCA--GGC-CgGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUagCUGuGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 29978 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 49254 0.66 0.842735
Target:  5'- -gGGC-GUCCGgGgcCGACuCCGGCGCc -3'
miRNA:   3'- gaCUGcCAGGCgUa-GCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 121895 0.66 0.842735
Target:  5'- -gGGCGGggCCGCA--GGC-CgGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUagCUGuGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 46308 0.66 0.842735
Target:  5'- -cGGCGGgCCGCGcgggCGACAgCCGcCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-GGCcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.