miRNA display CGI


Results 61 - 80 of 550 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 16725 0.69 0.708682
Target:  5'- -gGGcCGGUcCCGCucgcccGUCGACGCagGGCGCc -3'
miRNA:   3'- gaCU-GCCA-GGCG------UAGCUGUGg-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 17487 0.67 0.826659
Target:  5'- cCUGACGGcccucuUCCGCGcCGGCcCCaGcCGCg -3'
miRNA:   3'- -GACUGCC------AGGCGUaGCUGuGGcC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 17612 0.68 0.769201
Target:  5'- -aGGCGGgcccgggcgaaccgcUCCGcCGUCGGUGCCGGgGCu -3'
miRNA:   3'- gaCUGCC---------------AGGC-GUAGCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 18276 0.69 0.71836
Target:  5'- gUGcGCGaUCCGCAgggccuccUCcGCGCCGGCGCc -3'
miRNA:   3'- gAC-UGCcAGGCGU--------AGcUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 18437 0.71 0.580201
Target:  5'- -cGGCGGgggCCGCGUCcgGugGCgCGGCGg -3'
miRNA:   3'- gaCUGCCa--GGCGUAG--CugUG-GCCGCg -5'
21383 3' -58.1 NC_004812.1 + 18704 0.67 0.78368
Target:  5'- --aGCGGcagCCGCAguagcuccgCGGCGCUGGgGCg -3'
miRNA:   3'- gacUGCCa--GGCGUa--------GCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 18989 0.69 0.726052
Target:  5'- -gGGCGGaUCCaGCAgccggaggcccgCGGCcgcggGCCGGCGCa -3'
miRNA:   3'- gaCUGCC-AGG-CGUa-----------GCUG-----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 18999 0.7 0.669442
Target:  5'- gUGcACGG-CCGCcUCGAagaucaccagGCCGGCGCu -3'
miRNA:   3'- gAC-UGCCaGGCGuAGCUg---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 19141 0.7 0.619802
Target:  5'- -gGGCGGccagcgCCGCGgggggcgCGGCGgCGGCGCc -3'
miRNA:   3'- gaCUGCCa-----GGCGUa------GCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 19526 0.67 0.826659
Target:  5'- --cGCGaaCCGCG-CGGCGCCGGUGUc -3'
miRNA:   3'- gacUGCcaGGCGUaGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 19702 0.7 0.619802
Target:  5'- -cGGCGG--CGCG-CGGCGCCGGCGa -3'
miRNA:   3'- gaCUGCCagGCGUaGCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 19767 0.66 0.834784
Target:  5'- -cGGgGGUCCcagGCGaCGcGCGCCGGgGCg -3'
miRNA:   3'- gaCUgCCAGG---CGUaGC-UGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 19909 0.72 0.550845
Target:  5'- -cGGCGGcCCGCGcCGccgccaccGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCaGGCGUaGC--------UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 20289 0.66 0.850505
Target:  5'- -cGGgGGUggGCggCG-CGCCGGCGCa -3'
miRNA:   3'- gaCUgCCAggCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 20801 0.69 0.71836
Target:  5'- -cGGCGcGcCCGCGUCGGCGCCcGCc- -3'
miRNA:   3'- gaCUGC-CaGGCGUAGCUGUGGcCGcg -5'
21383 3' -58.1 NC_004812.1 + 21122 0.68 0.746941
Target:  5'- -cGGCGGccugggcCUGCAgCGACacguuggugucGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa------GGCGUaGCUG-----------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 21153 0.69 0.724133
Target:  5'- -cGGCGGgggucucggcgugCCGCGg-GACGCCgaGGCGCg -3'
miRNA:   3'- gaCUGCCa------------GGCGUagCUGUGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 21605 0.68 0.737498
Target:  5'- -cGACGGggaCCGggcgaGUCGGC-CCGGCGg -3'
miRNA:   3'- gaCUGCCa--GGCg----UAGCUGuGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 22306 0.74 0.422048
Target:  5'- uCUGGCGGggggGCcUCGGCGCCGGgGCu -3'
miRNA:   3'- -GACUGCCagg-CGuAGCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 22535 0.66 0.857338
Target:  5'- -cGGCGcccCCGCGUcgggaaaCGACACCGGCcCg -3'
miRNA:   3'- gaCUGCca-GGCGUA-------GCUGUGGCCGcG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.