miRNA display CGI


Results 81 - 100 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 22987 0.76 0.33454
Target:  5'- gCUGGCGGUggCCGCcuacgucgucGUCGGCGCgacaaCGGCGCg -3'
miRNA:   3'- -GACUGCCA--GGCG----------UAGCUGUG-----GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 23278 0.69 0.712561
Target:  5'- cCUGAUGGacgUggccccgacccaccaCCGCAUCGugGguCCGGUGCg -3'
miRNA:   3'- -GACUGCC---A---------------GGCGUAGCugU--GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 23446 0.66 0.850505
Target:  5'- cCUGGCGG-CCGCGUU--UGCC-GCGCu -3'
miRNA:   3'- -GACUGCCaGGCGUAGcuGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 23501 0.68 0.746941
Target:  5'- -cGGCGGgccgggCGCggCGGCGCCGGCu- -3'
miRNA:   3'- gaCUGCCag----GCGuaGCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 23612 0.68 0.746941
Target:  5'- -gGGCGccccggucGUCCGCG-CGGcCGCCGGgGCg -3'
miRNA:   3'- gaCUGC--------CAGGCGUaGCU-GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 25093 0.7 0.629741
Target:  5'- -gGGCGGcgCCGCcgCG-CGCCGacGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGuaGCuGUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 25199 0.66 0.858088
Target:  5'- -cGGCGGcUCCGCc----CGCCGGCGg -3'
miRNA:   3'- gaCUGCC-AGGCGuagcuGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 25348 0.66 0.834784
Target:  5'- -cGGCGGUggGCggCGACcacgggcucGCCGGCGUc -3'
miRNA:   3'- gaCUGCCAggCGuaGCUG---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 25528 0.68 0.746941
Target:  5'- -cGACGGgCCGCcgCGAaCGCCGGa-- -3'
miRNA:   3'- gaCUGCCaGGCGuaGCU-GUGGCCgcg -5'
21383 3' -58.1 NC_004812.1 + 25742 0.68 0.737498
Target:  5'- gUGugGGUC---AUCGACGCCGccGCGCc -3'
miRNA:   3'- gACugCCAGgcgUAGCUGUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 25841 0.68 0.756289
Target:  5'- --cGCGGggCCGCggCGGCcgACuCGGCGCg -3'
miRNA:   3'- gacUGCCa-GGCGuaGCUG--UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 25873 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 26187 0.69 0.689152
Target:  5'- --cGCGGgCCGCAgCGAgCGgCGGCGCg -3'
miRNA:   3'- gacUGCCaGGCGUaGCU-GUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 26325 0.67 0.809916
Target:  5'- -cGACGGguaCGCcagCGGCGagccguggcCCGGCGCc -3'
miRNA:   3'- gaCUGCCag-GCGua-GCUGU---------GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 26715 0.67 0.818367
Target:  5'- -cGcCGG-CCGCuUCGGCugggGCCuGGCGCa -3'
miRNA:   3'- gaCuGCCaGGCGuAGCUG----UGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 26966 0.74 0.43938
Target:  5'- cCUGGCGG-CCGCccucucCGACgagggccccGCCGGCGCc -3'
miRNA:   3'- -GACUGCCaGGCGua----GCUG---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27161 0.69 0.689152
Target:  5'- gCUGGCGG-CCGCG-CG-CGCCGugccgccgccGCGCg -3'
miRNA:   3'- -GACUGCCaGGCGUaGCuGUGGC----------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 27194 0.71 0.570372
Target:  5'- -gGACGGcccgCCGCAgCGACG-CGGCGUc -3'
miRNA:   3'- gaCUGCCa---GGCGUaGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27275 0.75 0.396838
Target:  5'- cCUGcGCGGggaccUCCGCGUCGcCGgCGGCGCc -3'
miRNA:   3'- -GAC-UGCC-----AGGCGUAGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27308 0.66 0.865479
Target:  5'- -cGA-GG-CCGcCGUCGcCGCCGuGCGCg -3'
miRNA:   3'- gaCUgCCaGGC-GUAGCuGUGGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.