miRNA display CGI


Results 101 - 120 of 550 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 27368 0.67 0.809916
Target:  5'- gCUGgcgcGCGGcCCGCGccaggugCGcucCGCCGGCGCc -3'
miRNA:   3'- -GAC----UGCCaGGCGUa------GCu--GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27470 0.75 0.364771
Target:  5'- -gGGCGGcgCCGCG-CGccCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUaGCu-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27671 0.69 0.702845
Target:  5'- -cGGCGGcuggcgCCGCGUgcCGccggggcccagccacACGCCGGCGCc -3'
miRNA:   3'- gaCUGCCa-----GGCGUA--GC---------------UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27796 0.7 0.648625
Target:  5'- cCUGGCGcG-CCGCGcucgccuUCGAC-CCGcGCGCg -3'
miRNA:   3'- -GACUGC-CaGGCGU-------AGCUGuGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 28119 0.68 0.737498
Target:  5'- aCUGGacCGGcCCGCccgacgucUCGGCGCUgGGCGCg -3'
miRNA:   3'- -GACU--GCCaGGCGu-------AGCUGUGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 28396 0.67 0.801312
Target:  5'- gCUGGCcuccGG-CCGCGUCuucgGGC-CCGGCGUc -3'
miRNA:   3'- -GACUG----CCaGGCGUAG----CUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 28726 0.66 0.850505
Target:  5'- cCUGGCgcuGGaCCGC---GACGCCGcGCGCg -3'
miRNA:   3'- -GACUG---CCaGGCGuagCUGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 29462 0.69 0.698943
Target:  5'- -gGACGGgcgggCCGCG-CGGgACCcGCGCg -3'
miRNA:   3'- gaCUGCCa----GGCGUaGCUgUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 29581 0.66 0.865479
Target:  5'- -cGGCGG-CgGCAugcccUCGcGCGgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGU-----AGC-UGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 29619 0.7 0.619802
Target:  5'- -cGGCGcUCCGCcgCcgcccgccgagGACGCCGGCGUc -3'
miRNA:   3'- gaCUGCcAGGCGuaG-----------CUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 29693 0.67 0.809916
Target:  5'- --cGCGG-CCGcCGUCGGgGCCGGgcCGCg -3'
miRNA:   3'- gacUGCCaGGC-GUAGCUgUGGCC--GCG- -5'
21383 3' -58.1 NC_004812.1 + 29917 0.7 0.629741
Target:  5'- gUGGCGG-CgGCGaCGGCGaCGGCGCg -3'
miRNA:   3'- gACUGCCaGgCGUaGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 29978 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 30376 0.68 0.737498
Target:  5'- -cGGCGG-CCGgGUCGGgGCUcuccuccgggGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgUAGCUgUGG----------CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 30627 0.72 0.531526
Target:  5'- gUGACGGgCCGCGcgGACGCgGGgCGCg -3'
miRNA:   3'- gACUGCCaGGCGUagCUGUGgCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 30946 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 30962 0.66 0.850505
Target:  5'- -cGAgGGUCagguaCGCcgCGACGuuGGCGg -3'
miRNA:   3'- gaCUgCCAG-----GCGuaGCUGUggCCGCg -5'
21383 3' -58.1 NC_004812.1 + 31183 0.74 0.43938
Target:  5'- -gGGCGGUCCGUcguccgcaggGUCGuccCGCUGGUGCu -3'
miRNA:   3'- gaCUGCCAGGCG----------UAGCu--GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 31344 0.68 0.765534
Target:  5'- --cGCGcGcCCGCcgCGAgcccgggcCGCCGGCGCg -3'
miRNA:   3'- gacUGC-CaGGCGuaGCU--------GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 31472 0.69 0.689152
Target:  5'- --cGCGG-CCGCGUgGAgcCGCgGGCGCg -3'
miRNA:   3'- gacUGCCaGGCGUAgCU--GUGgCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.