miRNA display CGI


Results 61 - 80 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 142484 0.68 0.765534
Target:  5'- cCUGACGcGgcuggCgGCGUUcACGCaCGGCGCg -3'
miRNA:   3'- -GACUGC-Ca----GgCGUAGcUGUG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 142418 0.67 0.801312
Target:  5'- -gGACGGccggaacgaguUCCGCGcccuggCGACGCUGGagaGCa -3'
miRNA:   3'- gaCUGCC-----------AGGCGUa-----GCUGUGGCCg--CG- -5'
21383 3' -58.1 NC_004812.1 + 142416 0.66 0.857338
Target:  5'- cCUGGCGcggcgacgcaguuGUCCGCgcGUCG--GCCGcGCGCg -3'
miRNA:   3'- -GACUGC-------------CAGGCG--UAGCugUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 142143 0.66 0.834784
Target:  5'- gUGcUGGaCUGCGUgGugACCGGgGCg -3'
miRNA:   3'- gACuGCCaGGCGUAgCugUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 141862 0.67 0.817529
Target:  5'- gUGACGGUggaCgGCAUCGGCAugcucccCCGGUuCa -3'
miRNA:   3'- gACUGCCA---GgCGUAGCUGU-------GGCCGcG- -5'
21383 3' -58.1 NC_004812.1 + 141798 0.66 0.842735
Target:  5'- -gGGCGGgCCGCGcgggggugccgcUCGGCcaUGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGU------------AGCUGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 141761 0.66 0.865479
Target:  5'- -gGGCGG-CCGCGgggCGGCGucgaaCGGcCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUa--GCUGUg----GCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 141473 0.68 0.756289
Target:  5'- -cGACGG-CUGCgacgucgccGUCGGgggcgccgccgUACCGGCGCa -3'
miRNA:   3'- gaCUGCCaGGCG---------UAGCU-----------GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 141370 0.67 0.817529
Target:  5'- -gGGCcgccgGGUCCGCccugcgcgaagcaGUCGGCcagGCCGcGCGCa -3'
miRNA:   3'- gaCUG-----CCAGGCG-------------UAGCUG---UGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 141187 0.66 0.834784
Target:  5'- gCUGGCGGUugcgcucgcCCGCGUucCGGCggGCgGGgGCg -3'
miRNA:   3'- -GACUGCCA---------GGCGUA--GCUG--UGgCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 140640 0.66 0.850505
Target:  5'- -aGACGcG-CCGCcgCG-CGgCGGCGCc -3'
miRNA:   3'- gaCUGC-CaGGCGuaGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 140619 0.71 0.570372
Target:  5'- gCUGGCGcGgggCCGCgggGUCGGCgccGCCGGcCGCg -3'
miRNA:   3'- -GACUGC-Ca--GGCG---UAGCUG---UGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 140591 0.77 0.286149
Target:  5'- gCUGACccuGG-CCGcCAUgGGCGCCGGCGCc -3'
miRNA:   3'- -GACUG---CCaGGC-GUAgCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 139551 0.7 0.669442
Target:  5'- -gGGCGcGUCCGCggCGGCcgggACCgaGGCGCc -3'
miRNA:   3'- gaCUGC-CAGGCGuaGCUG----UGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 139411 0.7 0.639682
Target:  5'- ---cCGG-CCGCGaaCGACACCGGgGCg -3'
miRNA:   3'- gacuGCCaGGCGUa-GCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 139093 0.66 0.865479
Target:  5'- uUGcACGGggagCCGaaagacgCGGCugggGCCGGCGCg -3'
miRNA:   3'- gAC-UGCCa---GGCgua----GCUG----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 138979 0.7 0.656565
Target:  5'- -gGGCGcGUCCGa--CGACcaccaggacacgagGCCGGCGCg -3'
miRNA:   3'- gaCUGC-CAGGCguaGCUG--------------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 138818 0.69 0.727968
Target:  5'- uUGACGGgCCGgAggGACGCCGcuGCGUg -3'
miRNA:   3'- gACUGCCaGGCgUagCUGUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 138652 0.69 0.698943
Target:  5'- cCUGACGG-CCGcCGUCGcC-CCGG-GCg -3'
miRNA:   3'- -GACUGCCaGGC-GUAGCuGuGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 138294 0.75 0.400143
Target:  5'- -gGGCGGUggUCGCGgcgggcucggagggUGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA--GGCGUa-------------GCUGUGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.