miRNA display CGI


Results 81 - 100 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 138264 0.69 0.71836
Target:  5'- -cGGCGG-CCGCgGUCGcGCGCC-GCGCc -3'
miRNA:   3'- gaCUGCCaGGCG-UAGC-UGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 138240 0.68 0.737498
Target:  5'- aUGugGGgcCCGCG--GGC-CCGGCGCc -3'
miRNA:   3'- gACugCCa-GGCGUagCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 137501 0.69 0.709653
Target:  5'- gCUGGCGGgggccuggcccgcggCCGgAgcccgagcgcUCGGC-CCGGCGCg -3'
miRNA:   3'- -GACUGCCa--------------GGCgU----------AGCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 137308 0.73 0.457112
Target:  5'- cCUGGgGGcCCGCGuucgcccccUCGACACC-GCGCa -3'
miRNA:   3'- -GACUgCCaGGCGU---------AGCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 137258 0.66 0.850505
Target:  5'- --cGCGGUCgGgGccgagggguucUCGGCcCCGGCGCu -3'
miRNA:   3'- gacUGCCAGgCgU-----------AGCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 137182 0.69 0.731789
Target:  5'- -aGGCGGUCCuGCGgccgcgCGGCcacgcgcaggccgugACCGcGCGCg -3'
miRNA:   3'- gaCUGCCAGG-CGUa-----GCUG---------------UGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 137069 1.1 0.001879
Target:  5'- gCUGACGGUCCGCAUCGACACCGGCGCc -3'
miRNA:   3'- -GACUGCCAGGCGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136973 0.74 0.430663
Target:  5'- cCUGGCGGcccacgUCGCcgCGAgACCGGaCGCg -3'
miRNA:   3'- -GACUGCCa-----GGCGuaGCUgUGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 136889 0.71 0.590064
Target:  5'- -cGAgGGUCUGCccgaCGGCcggucGCCGGCGCc -3'
miRNA:   3'- gaCUgCCAGGCGua--GCUG-----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136672 0.77 0.305498
Target:  5'- --uACGGUCCGgcggaaaUAUCGGcCGCCGGCGCg -3'
miRNA:   3'- gacUGCCAGGC-------GUAGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136583 0.69 0.708682
Target:  5'- -gGACGcucgCCGCcUCuACGCUGGCGCg -3'
miRNA:   3'- gaCUGCca--GGCGuAGcUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136490 0.66 0.864749
Target:  5'- ---cCGGUCCGCucccccgCGcgccgcuGCGCgCGGCGCg -3'
miRNA:   3'- gacuGCCAGGCGua-----GC-------UGUG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136440 0.66 0.842735
Target:  5'- -aGGCGGcCCGg--CGGCACCGcaggcgaauccGCGCg -3'
miRNA:   3'- gaCUGCCaGGCguaGCUGUGGC-----------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 136300 0.73 0.46612
Target:  5'- -gGGCGGUgcCUGCGcgCGcgcuGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA--GGCGUa-GC----UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136174 0.66 0.834784
Target:  5'- uUGGC-GUCCGCG--GACGuCCGGgGCa -3'
miRNA:   3'- gACUGcCAGGCGUagCUGU-GGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 135808 0.69 0.679315
Target:  5'- -aGGCGGg-CGC--CGACGCgGGCGCg -3'
miRNA:   3'- gaCUGCCagGCGuaGCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 135200 0.67 0.78368
Target:  5'- -gGGCGcugcgaCGCGUCGGCGCgCGGCGa -3'
miRNA:   3'- gaCUGCcag---GCGUAGCUGUG-GCCGCg -5'
21383 3' -58.1 NC_004812.1 + 134690 0.66 0.865479
Target:  5'- -gGGCGGagCCGC--CGAgcCGCCGGCuGCg -3'
miRNA:   3'- gaCUGCCa-GGCGuaGCU--GUGGCCG-CG- -5'
21383 3' -58.1 NC_004812.1 + 133077 0.69 0.689152
Target:  5'- -gGGCGGUcCCGCccccaccgcCGGCauaaaGCCGGCGCc -3'
miRNA:   3'- gaCUGCCA-GGCGua-------GCUG-----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 133053 0.7 0.629741
Target:  5'- --cGCGGUCaCGCcgaCGAUGCCGGCGg -3'
miRNA:   3'- gacUGCCAG-GCGua-GCUGUGGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.