miRNA display CGI


Results 41 - 60 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 67063 0.78 0.267162
Target:  5'- gCUGAgccuccgGGUCCGCcgccaggcgGUCGAcCACCGGCGCg -3'
miRNA:   3'- -GACUg------CCAGGCG---------UAGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 121017 0.78 0.249207
Target:  5'- -cGGCGGgCCGgGggcgcuccccUCGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgU----------AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 700 0.8 0.201279
Target:  5'- ----gGGUCCggagcuccgucgGCGUCGGCGCCGGCGCg -3'
miRNA:   3'- gacugCCAGG------------CGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 127763 0.82 0.135712
Target:  5'- -cGGCGGggUCCGCGUCGGCGuCCGcGCGCa -3'
miRNA:   3'- gaCUGCC--AGGCGUAGCUGU-GGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 45056 0.85 0.095078
Target:  5'- cCUGG-GGUCCGCGUCGGCcggGCCGGCGUc -3'
miRNA:   3'- -GACUgCCAGGCGUAGCUG---UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 68870 0.75 0.372617
Target:  5'- -cGuCGGUCCGCGgcccCGGCGCCcGCGCc -3'
miRNA:   3'- gaCuGCCAGGCGUa---GCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 90816 0.75 0.372617
Target:  5'- cCUGGCGGcgUCGUGgagcacgUGGCGCCGGCGCc -3'
miRNA:   3'- -GACUGCCa-GGCGUa------GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 110045 0.74 0.430663
Target:  5'- -gGGCGGUgCGCggCGAC-CCGGgGCu -3'
miRNA:   3'- gaCUGCCAgGCGuaGCUGuGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 123079 0.74 0.422048
Target:  5'- -cGGCgcaGGUCuCGCGgggCGGgGCCGGCGCg -3'
miRNA:   3'- gaCUG---CCAG-GCGUa--GCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 109974 0.74 0.413537
Target:  5'- gCUGuuucCGGgcgcCCGCGUCGAC-CCGGaCGCg -3'
miRNA:   3'- -GACu---GCCa---GGCGUAGCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 102187 0.74 0.405133
Target:  5'- -cGGCGGgCC-CAUCGACAcCCGGCGg -3'
miRNA:   3'- gaCUGCCaGGcGUAGCUGU-GGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 152783 0.75 0.396838
Target:  5'- cCUGcGCGGggaccUCCGCGUCGcCGgCGGCGCc -3'
miRNA:   3'- -GAC-UGCC-----AGGCGUAGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 121855 0.75 0.396838
Target:  5'- -cGGCGG-CCGCggCGAC-CaCGGCGCa -3'
miRNA:   3'- gaCUGCCaGGCGuaGCUGuG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 71004 0.75 0.396838
Target:  5'- -aGACGGcccgcucgCCGCcgCGGgGCCGGCGUc -3'
miRNA:   3'- gaCUGCCa-------GGCGuaGCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 131418 0.75 0.38784
Target:  5'- -cGGCGGgcggagCCGCcgCGACGCCGccccggaGCGCg -3'
miRNA:   3'- gaCUGCCa-----GGCGuaGCUGUGGC-------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 151381 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 37474 0.75 0.380578
Target:  5'- -gGGCGGUacggccggucguUCGCcgCGuCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA------------GGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 108389 0.75 0.372617
Target:  5'- cCUGggccGCGGggcUCCGC-UCG-CGCCGGCGCa -3'
miRNA:   3'- -GAC----UGCC---AGGCGuAGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 145386 0.75 0.372617
Target:  5'- gUGugGGcCUGCGUC-ACcuGCCGGCGCg -3'
miRNA:   3'- gACugCCaGGCGUAGcUG--UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 108482 0.75 0.372617
Target:  5'- gCUGACGGU-CGCGgucaaCGGCGCCaGCGCc -3'
miRNA:   3'- -GACUGCCAgGCGUa----GCUGUGGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.