miRNA display CGI


Results 61 - 80 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 37474 0.75 0.380578
Target:  5'- -gGGCGGUacggccggucguUCGCcgCGuCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA------------GGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151381 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 31183 0.74 0.43938
Target:  5'- -gGGCGGUCCGUcguccgcaggGUCGuccCGCUGGUGCu -3'
miRNA:   3'- gaCUGCCAGGCG----------UAGCu--GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 127517 0.74 0.43938
Target:  5'- -cGGCGGUCgcucgggGCGcCGACGCCGGCGg -3'
miRNA:   3'- gaCUGCCAGg------CGUaGCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 129202 0.74 0.448197
Target:  5'- uCUGGaagagcaGGUCgGCGgcggCGGCGCCGGCGg -3'
miRNA:   3'- -GACUg------CCAGgCGUa---GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 43682 0.74 0.448197
Target:  5'- --aGCGGcUCCGCGUUGugGgucgggCCGGCGCa -3'
miRNA:   3'- gacUGCC-AGGCGUAGCugU------GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 7916 0.73 0.457112
Target:  5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3'
miRNA:   3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 137308 0.73 0.457112
Target:  5'- cCUGGgGGcCCGCGuucgcccccUCGACACC-GCGCa -3'
miRNA:   3'- -GACUgCCaGGCGU---------AGCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 55158 0.73 0.47522
Target:  5'- gCUGACGG-CC-CAcUCGGUGCCGGCGCc -3'
miRNA:   3'- -GACUGCCaGGcGU-AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 65745 0.73 0.47522
Target:  5'- -aGACGGcgaUCCGCcuccgCGGCGCCGGCu- -3'
miRNA:   3'- gaCUGCC---AGGCGua---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 152475 0.74 0.43938
Target:  5'- cCUGGCGG-CCGCccucucCGACgagggccccGCCGGCGCc -3'
miRNA:   3'- -GACUGCCaGGCGua----GCUG---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 108023 0.74 0.430663
Target:  5'- --cGCGG-CCGCGUCGcCGCCGGUGg -3'
miRNA:   3'- gacUGCCaGGCGUAGCuGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 131418 0.75 0.38784
Target:  5'- -cGGCGGgcggagCCGCcgCGACGCCGccccggaGCGCg -3'
miRNA:   3'- gaCUGCCa-----GGCGuaGCUGUGGC-------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 71004 0.75 0.396838
Target:  5'- -aGACGGcccgcucgCCGCcgCGGgGCCGGCGUc -3'
miRNA:   3'- gaCUGCCa-------GGCGuaGCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 121855 0.75 0.396838
Target:  5'- -cGGCGG-CCGCggCGAC-CaCGGCGCa -3'
miRNA:   3'- gaCUGCCaGGCGuaGCUGuG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152783 0.75 0.396838
Target:  5'- cCUGcGCGGggaccUCCGCGUCGcCGgCGGCGCc -3'
miRNA:   3'- -GAC-UGCC-----AGGCGUAGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 102187 0.74 0.405133
Target:  5'- -cGGCGGgCC-CAUCGACAcCCGGCGg -3'
miRNA:   3'- gaCUGCCaGGcGUAGCUGU-GGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 109974 0.74 0.413537
Target:  5'- gCUGuuucCGGgcgcCCGCGUCGAC-CCGGaCGCg -3'
miRNA:   3'- -GACu---GCCa---GGCGUAGCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 123079 0.74 0.422048
Target:  5'- -cGGCgcaGGUCuCGCGgggCGGgGCCGGCGCg -3'
miRNA:   3'- gaCUG---CCAG-GCGUa--GCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 110045 0.74 0.430663
Target:  5'- -gGGCGGUgCGCggCGAC-CCGGgGCu -3'
miRNA:   3'- gaCUGCCAgGCGuaGCUGuGGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.