Results 81 - 100 of 550 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21383 | 3' | -58.1 | NC_004812.1 | + | 98398 | 0.73 | 0.484407 |
Target: 5'- -cGGCGG-CCGCGgggCGGCGCCGcaGCGUc -3' miRNA: 3'- gaCUGCCaGGCGUa--GCUGUGGC--CGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 1108 | 0.73 | 0.484407 |
Target: 5'- -cGGCGGcCCGgGUCGcuuCGCCGGgGCc -3' miRNA: 3'- gaCUGCCaGGCgUAGCu--GUGGCCgCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 129430 | 0.73 | 0.493678 |
Target: 5'- -cGGCGGggCCGCGcggCGGCgGCaCGGCGCg -3' miRNA: 3'- gaCUGCCa-GGCGUa--GCUG-UG-GCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 106502 | 0.72 | 0.50303 |
Target: 5'- -gGGCgcgGGUCCGCGgcgCGggGCGCCGGCGg -3' miRNA: 3'- gaCUG---CCAGGCGUa--GC--UGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 109693 | 0.72 | 0.512459 |
Target: 5'- -gGAUGuGUCCGCcgCGGCGgCGGcCGCc -3' miRNA: 3'- gaCUGC-CAGGCGuaGCUGUgGCC-GCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 45 | 0.72 | 0.512459 |
Target: 5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3' miRNA: 3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 156455 | 0.72 | 0.512459 |
Target: 5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3' miRNA: 3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 65745 | 0.73 | 0.47522 |
Target: 5'- -aGACGGcgaUCCGCcuccgCGGCGCCGGCu- -3' miRNA: 3'- gaCUGCC---AGGCGua---GCUGUGGCCGcg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 55158 | 0.73 | 0.47522 |
Target: 5'- gCUGACGG-CC-CAcUCGGUGCCGGCGCc -3' miRNA: 3'- -GACUGCCaGGcGU-AGCUGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 137308 | 0.73 | 0.457112 |
Target: 5'- cCUGGgGGcCCGCGuucgcccccUCGACACC-GCGCa -3' miRNA: 3'- -GACUgCCaGGCGU---------AGCUGUGGcCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 123079 | 0.74 | 0.422048 |
Target: 5'- -cGGCgcaGGUCuCGCGgggCGGgGCCGGCGCg -3' miRNA: 3'- gaCUG---CCAG-GCGUa--GCUgUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 110045 | 0.74 | 0.430663 |
Target: 5'- -gGGCGGUgCGCggCGAC-CCGGgGCu -3' miRNA: 3'- gaCUGCCAgGCGuaGCUGuGGCCgCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 108023 | 0.74 | 0.430663 |
Target: 5'- --cGCGG-CCGCGUCGcCGCCGGUGg -3' miRNA: 3'- gacUGCCaGGCGUAGCuGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 152475 | 0.74 | 0.43938 |
Target: 5'- cCUGGCGG-CCGCccucucCGACgagggccccGCCGGCGCc -3' miRNA: 3'- -GACUGCCaGGCGua----GCUG---------UGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 31183 | 0.74 | 0.43938 |
Target: 5'- -gGGCGGUCCGUcguccgcaggGUCGuccCGCUGGUGCu -3' miRNA: 3'- gaCUGCCAGGCG----------UAGCu--GUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 127517 | 0.74 | 0.43938 |
Target: 5'- -cGGCGGUCgcucgggGCGcCGACGCCGGCGg -3' miRNA: 3'- gaCUGCCAGg------CGUaGCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 129202 | 0.74 | 0.448197 |
Target: 5'- uCUGGaagagcaGGUCgGCGgcggCGGCGCCGGCGg -3' miRNA: 3'- -GACUg------CCAGgCGUa---GCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 43682 | 0.74 | 0.448197 |
Target: 5'- --aGCGGcUCCGCGUUGugGgucgggCCGGCGCa -3' miRNA: 3'- gacUGCC-AGGCGUAGCugU------GGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 7916 | 0.73 | 0.457112 |
Target: 5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3' miRNA: 3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 103561 | 0.72 | 0.521959 |
Target: 5'- cCUGGCGGUgcagCUGCcgCG-UGCUGGCGCg -3' miRNA: 3'- -GACUGCCA----GGCGuaGCuGUGGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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