Results 101 - 120 of 550 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21383 | 3' | -58.1 | NC_004812.1 | + | 129610 | 0.72 | 0.550845 |
Target: 5'- -cGGCGGggCCGUccucccCGGCGCCGGCGg -3' miRNA: 3'- gaCUGCCa-GGCGua----GCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 19909 | 0.72 | 0.550845 |
Target: 5'- -cGGCGGcCCGCGcCGccgccaccGCGCCGGCGg -3' miRNA: 3'- gaCUGCCaGGCGUaGC--------UGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 119965 | 0.71 | 0.560585 |
Target: 5'- cCUGugGGcCUGgG-CGGCGCCcGGCGCc -3' miRNA: 3'- -GACugCCaGGCgUaGCUGUGG-CCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 76988 | 0.71 | 0.560585 |
Target: 5'- -gGGCGGcuuuggCCGCcUCGGCGCgCGcGCGCg -3' miRNA: 3'- gaCUGCCa-----GGCGuAGCUGUG-GC-CGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 27194 | 0.71 | 0.570372 |
Target: 5'- -gGACGGcccgCCGCAgCGACG-CGGCGUc -3' miRNA: 3'- gaCUGCCa---GGCGUaGCUGUgGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 106502 | 0.72 | 0.50303 |
Target: 5'- -gGGCgcgGGUCCGCGgcgCGggGCGCCGGCGg -3' miRNA: 3'- gaCUG---CCAGGCGUa--GC--UGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 129430 | 0.73 | 0.493678 |
Target: 5'- -cGGCGGggCCGCGcggCGGCgGCaCGGCGCg -3' miRNA: 3'- gaCUGCCa-GGCGUa--GCUG-UG-GCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 31183 | 0.74 | 0.43938 |
Target: 5'- -gGGCGGUCCGUcguccgcaggGUCGuccCGCUGGUGCu -3' miRNA: 3'- gaCUGCCAGGCG----------UAGCu--GUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 127517 | 0.74 | 0.43938 |
Target: 5'- -cGGCGGUCgcucgggGCGcCGACGCCGGCGg -3' miRNA: 3'- gaCUGCCAGg------CGUaGCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 129202 | 0.74 | 0.448197 |
Target: 5'- uCUGGaagagcaGGUCgGCGgcggCGGCGCCGGCGg -3' miRNA: 3'- -GACUg------CCAGgCGUa---GCUGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 43682 | 0.74 | 0.448197 |
Target: 5'- --aGCGGcUCCGCGUUGugGgucgggCCGGCGCa -3' miRNA: 3'- gacUGCC-AGGCGUAGCugU------GGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 7916 | 0.73 | 0.457112 |
Target: 5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3' miRNA: 3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 137308 | 0.73 | 0.457112 |
Target: 5'- cCUGGgGGcCCGCGuucgcccccUCGACACC-GCGCa -3' miRNA: 3'- -GACUgCCaGGCGU---------AGCUGUGGcCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 55158 | 0.73 | 0.47522 |
Target: 5'- gCUGACGG-CC-CAcUCGGUGCCGGCGCc -3' miRNA: 3'- -GACUGCCaGGcGU-AGCUGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 65745 | 0.73 | 0.47522 |
Target: 5'- -aGACGGcgaUCCGCcuccgCGGCGCCGGCu- -3' miRNA: 3'- gaCUGCC---AGGCGua---GCUGUGGCCGcg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 56428 | 0.73 | 0.47522 |
Target: 5'- --uGCGGUCCGCca-GGCGCCGG-GCg -3' miRNA: 3'- gacUGCCAGGCGuagCUGUGGCCgCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 94341 | 0.73 | 0.47522 |
Target: 5'- -cGugGGUCuccgcgCGCGgcgCGGCcCCGGCGCg -3' miRNA: 3'- gaCugCCAG------GCGUa--GCUGuGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 1312 | 0.73 | 0.484407 |
Target: 5'- -gGGCGGUCCGCGggCGGucCGCgGGCGg -3' miRNA: 3'- gaCUGCCAGGCGUa-GCU--GUGgCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 98398 | 0.73 | 0.484407 |
Target: 5'- -cGGCGG-CCGCGgggCGGCGCCGcaGCGUc -3' miRNA: 3'- gaCUGCCaGGCGUa--GCUGUGGC--CGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 1108 | 0.73 | 0.484407 |
Target: 5'- -cGGCGGcCCGgGUCGcuuCGCCGGgGCc -3' miRNA: 3'- gaCUGCCaGGCgUAGCu--GUGGCCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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