miRNA display CGI


Results 121 - 140 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 51200 0.71 0.599957
Target:  5'- -cGcCGGgccCCGCcgagcgcCGGCACCGGCGCc -3'
miRNA:   3'- gaCuGCCa--GGCGua-----GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 95511 0.71 0.599957
Target:  5'- --cGCGGggcgCCGCcUCGACcCCGGCGg -3'
miRNA:   3'- gacUGCCa---GGCGuAGCUGuGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 148279 0.72 0.547933
Target:  5'- uCUGGCGGcuucucggcgcUCCuCGUCGGCGuacgcgcggagcucCCGGCGCa -3'
miRNA:   3'- -GACUGCC-----------AGGcGUAGCUGU--------------GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 65153 0.72 0.541157
Target:  5'- -gGGCGcGUCCuCGUgGACgcccACCGGCGCa -3'
miRNA:   3'- gaCUGC-CAGGcGUAgCUG----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 50258 0.72 0.531526
Target:  5'- cCUGccguCGGUgUCGCuGUCGAC-CCGGCGCc -3'
miRNA:   3'- -GACu---GCCA-GGCG-UAGCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 55158 0.73 0.47522
Target:  5'- gCUGACGG-CC-CAcUCGGUGCCGGCGCc -3'
miRNA:   3'- -GACUGCCaGGcGU-AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 65745 0.73 0.47522
Target:  5'- -aGACGGcgaUCCGCcuccgCGGCGCCGGCu- -3'
miRNA:   3'- gaCUGCC---AGGCGua---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 56428 0.73 0.47522
Target:  5'- --uGCGGUCCGCca-GGCGCCGG-GCg -3'
miRNA:   3'- gacUGCCAGGCGuagCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 94341 0.73 0.47522
Target:  5'- -cGugGGUCuccgcgCGCGgcgCGGCcCCGGCGCg -3'
miRNA:   3'- gaCugCCAG------GCGUa--GCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 1312 0.73 0.484407
Target:  5'- -gGGCGGUCCGCGggCGGucCGCgGGCGg -3'
miRNA:   3'- gaCUGCCAGGCGUa-GCU--GUGgCCGCg -5'
21383 3' -58.1 NC_004812.1 + 98398 0.73 0.484407
Target:  5'- -cGGCGG-CCGCGgggCGGCGCCGcaGCGUc -3'
miRNA:   3'- gaCUGCCaGGCGUa--GCUGUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 1108 0.73 0.484407
Target:  5'- -cGGCGGcCCGgGUCGcuuCGCCGGgGCc -3'
miRNA:   3'- gaCUGCCaGGCgUAGCu--GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 71067 0.71 0.608879
Target:  5'- -cGGCGGUUCGgGcggcgcggggcguUCGGCgACCGGUGCc -3'
miRNA:   3'- gaCUGCCAGGCgU-------------AGCUG-UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 129430 0.73 0.493678
Target:  5'- -cGGCGGggCCGCGcggCGGCgGCaCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUa--GCUG-UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 106502 0.72 0.50303
Target:  5'- -gGGCgcgGGUCCGCGgcgCGggGCGCCGGCGg -3'
miRNA:   3'- gaCUG---CCAGGCGUa--GC--UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 109693 0.72 0.512459
Target:  5'- -gGAUGuGUCCGCcgCGGCGgCGGcCGCc -3'
miRNA:   3'- gaCUGC-CAGGCGuaGCUGUgGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 45 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 156455 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 103561 0.72 0.521959
Target:  5'- cCUGGCGGUgcagCUGCcgCG-UGCUGGCGCg -3'
miRNA:   3'- -GACUGCCA----GGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 156135 0.72 0.531526
Target:  5'- gUGACGGgCCGCGcgGACGCgGGgCGCg -3'
miRNA:   3'- gACUGCCaGGCGUagCUGUGgCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.