miRNA display CGI


Results 41 - 60 of 550 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 2008 0.74 0.43938
Target:  5'- -cGGCGGUCgcucgggGCGcCGACGCCGGCGg -3'
miRNA:   3'- gaCUGCCAGg------CGUaGCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 105389 0.75 0.364771
Target:  5'- -cGAUGGUCuCGC--UGGCGCCGGUGCc -3'
miRNA:   3'- gaCUGCCAG-GCGuaGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2255 0.82 0.135712
Target:  5'- -cGGCGGggUCCGCGUCGGCGuCCGcGCGCa -3'
miRNA:   3'- gaCUGCC--AGGCGUAGCUGU-GGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 82806 0.74 0.43938
Target:  5'- -gGugGGagCGCGg-GGCGCCGGCGCc -3'
miRNA:   3'- gaCugCCagGCGUagCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 55364 0.83 0.12584
Target:  5'- cCUGACGGcgCUGCggcccGUCGAgGCCGGCGCg -3'
miRNA:   3'- -GACUGCCa-GGCG-----UAGCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 140619 0.71 0.570372
Target:  5'- gCUGGCGcGgggCCGCgggGUCGGCgccGCCGGcCGCg -3'
miRNA:   3'- -GACUGC-Ca--GGCG---UAGCUG---UGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 48196 0.81 0.173953
Target:  5'- -cGAgGGUCCGCGccaCGuGCGCCGGCGCg -3'
miRNA:   3'- gaCUgCCAGGCGUa--GC-UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 107350 0.72 0.550845
Target:  5'- uUGACGGcgCCGgaGUCGGCcCCGGaCGCc -3'
miRNA:   3'- gACUGCCa-GGCg-UAGCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 43522 0.72 0.541157
Target:  5'- -cGugGGUCCGCcgCGGCGgUGuCGCg -3'
miRNA:   3'- gaCugCCAGGCGuaGCUGUgGCcGCG- -5'
21383 3' -58.1 NC_004812.1 + 42364 0.72 0.512459
Target:  5'- -gGGCGGUguuugUCGCGgcccgacCGGCGCCGGCGUu -3'
miRNA:   3'- gaCUGCCA-----GGCGUa------GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 3922 0.73 0.493678
Target:  5'- -cGGCGGggCCGCGcggCGGCgGCaCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUa--GCUG-UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 62366 0.73 0.476134
Target:  5'- -cGugGGUCgGCGcgaaccccaggccggCGACGCCGGCGa -3'
miRNA:   3'- gaCugCCAGgCGUa--------------GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 38817 0.73 0.457112
Target:  5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3'
miRNA:   3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136973 0.74 0.430663
Target:  5'- cCUGGCGGcccacgUCGCcgCGAgACCGGaCGCg -3'
miRNA:   3'- -GACUGCCa-----GGCGuaGCUgUGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 71533 0.74 0.422048
Target:  5'- -cGGCGGccUCCcugGCGUCGuACGCCGGgGCg -3'
miRNA:   3'- gaCUGCC--AGG---CGUAGC-UGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 138294 0.75 0.400143
Target:  5'- -gGGCGGUggUCGCGgcgggcucggagggUGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA--GGCGUa-------------GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 5910 0.75 0.38784
Target:  5'- -cGGCGGgcggagCCGCcgCGACGCCGccccggaGCGCg -3'
miRNA:   3'- gaCUGCCa-----GGCGuaGCUGUGGC-------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 51738 0.76 0.33454
Target:  5'- -cGACGGcgacgacgaCCGCcgCGGcCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa--------GGCGuaGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136672 0.77 0.305498
Target:  5'- --uACGGUCCGgcggaaaUAUCGGcCGCCGGCGCg -3'
miRNA:   3'- gacUGCCAGGC-------GUAGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151918 0.78 0.249207
Target:  5'- -cGGCGGgCCGgGggcgcuccccUCGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgU----------AGCUGUGGCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.