miRNA display CGI


Results 61 - 80 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 38817 0.73 0.457112
Target:  5'- gUGuCGGgggCUGCggCGcGCGCCGGCGCg -3'
miRNA:   3'- gACuGCCa--GGCGuaGC-UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 32009 0.73 0.484407
Target:  5'- -cGGCGGcCCGgGUCGcuuCGCCGGgGCc -3'
miRNA:   3'- gaCUGCCaGGCgUAGCu--GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 86746 0.8 0.196479
Target:  5'- -cGGgGGUCCGCGUCGGCcaUGGCGCa -3'
miRNA:   3'- gaCUgCCAGGCGUAGCUGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 46625 0.78 0.267162
Target:  5'- --uACGcGUCCGgGUCGACGCgGGCGCc -3'
miRNA:   3'- gacUGC-CAGGCgUAGCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 94658 0.76 0.313096
Target:  5'- uCUGGCGGcggCCGUugguuuuuAUCGACGCgGGUGCg -3'
miRNA:   3'- -GACUGCCa--GGCG--------UAGCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 33556 0.76 0.341922
Target:  5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3'
miRNA:   3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27275 0.75 0.396838
Target:  5'- cCUGcGCGGggaccUCCGCGUCGcCGgCGGCGCc -3'
miRNA:   3'- -GAC-UGCC-----AGGCGUAGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 61109 0.74 0.405133
Target:  5'- -aGGCGGcgccCCGCggCG-CGCCGGCGCc -3'
miRNA:   3'- gaCUGCCa---GGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 153980 0.74 0.422048
Target:  5'- -cGGCgcaGGUCuCGCGgggCGGgGCCGGCGCg -3'
miRNA:   3'- gaCUG---CCAG-GCGUa--GCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 44183 0.74 0.438504
Target:  5'- -aGcCGGUCUGCGgcggggguggggcUCGGCGgCGGCGCg -3'
miRNA:   3'- gaCuGCCAGGCGU-------------AGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 25093 0.7 0.629741
Target:  5'- -gGGCGGcgCCGCcgCG-CGCCGacGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGuaGCuGUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 100831 0.7 0.619802
Target:  5'- -gGGCGGg-CGCcgCGACGCCGGgGa -3'
miRNA:   3'- gaCUGCCagGCGuaGCUGUGGCCgCg -5'
21383 3' -58.1 NC_004812.1 + 30946 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 129410 0.72 0.531526
Target:  5'- gCUGACG--CCGCGUCG-CugCGGCGg -3'
miRNA:   3'- -GACUGCcaGGCGUAGCuGugGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 107350 0.72 0.550845
Target:  5'- uUGACGGcgCCGgaGUCGGCcCCGGaCGCc -3'
miRNA:   3'- gACUGCCa-GGCg-UAGCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 140619 0.71 0.570372
Target:  5'- gCUGGCGcGgggCCGCgggGUCGGCgccGCCGGcCGCg -3'
miRNA:   3'- -GACUGC-Ca--GGCG---UAGCUG---UGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 107593 0.71 0.580201
Target:  5'- uUGACcucGUCCGCGUgGGC-CCGGcCGCc -3'
miRNA:   3'- gACUGc--CAGGCGUAgCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 136889 0.71 0.590064
Target:  5'- -cGAgGGUCUGCccgaCGGCcggucGCCGGCGCc -3'
miRNA:   3'- gaCUgCCAGGCGua--GCUG-----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 45332 0.7 0.619802
Target:  5'- -aGGCGGgcgCCGUGUCGuuGCCcGCGCc -3'
miRNA:   3'- gaCUGCCa--GGCGUAGCugUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 87681 0.7 0.619802
Target:  5'- -cGGCGGUCCGCGUagGGCuuUCGGUGg -3'
miRNA:   3'- gaCUGCCAGGCGUAg-CUGu-GGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.