Results 81 - 100 of 550 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21383 | 3' | -58.1 | NC_004812.1 | + | 30627 | 0.72 | 0.531526 |
Target: 5'- gUGACGGgCCGCGcgGACGCgGGgCGCg -3' miRNA: 3'- gACUGCCaGGCGUagCUGUGgCC-GCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 146953 | 0.72 | 0.545025 |
Target: 5'- -cGugGGUCCGUccgggcggggugggaGUgGGCGCUGGgGCg -3' miRNA: 3'- gaCugCCAGGCG---------------UAgCUGUGGCCgCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 75308 | 0.72 | 0.550845 |
Target: 5'- cCUGGgGGUCUGCGaCG-CGCUGGCGa -3' miRNA: 3'- -GACUgCCAGGCGUaGCuGUGGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 76754 | 0.71 | 0.570372 |
Target: 5'- -cGGCGG-CCGCuGUCGuACACCcuggucaccauaGGCGCg -3' miRNA: 3'- gaCUGCCaGGCG-UAGC-UGUGG------------CCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 4239 | 0.71 | 0.590064 |
Target: 5'- -cGGCGG-CgGCggCGGCGgCGGCGCc -3' miRNA: 3'- gaCUGCCaGgCGuaGCUGUgGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 45332 | 0.7 | 0.619802 |
Target: 5'- -aGGCGGgcgCCGUGUCGuuGCCcGCGCc -3' miRNA: 3'- gaCUGCCa--GGCGUAGCugUGGcCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 87681 | 0.7 | 0.619802 |
Target: 5'- -cGGCGGUCCGCGUagGGCuuUCGGUGg -3' miRNA: 3'- gaCUGCCAGGCGUAg-CUGu-GGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 44183 | 0.74 | 0.438504 |
Target: 5'- -aGcCGGUCUGCGgcggggguggggcUCGGCGgCGGCGCg -3' miRNA: 3'- gaCuGCCAGGCGU-------------AGCUGUgGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 153980 | 0.74 | 0.422048 |
Target: 5'- -cGGCgcaGGUCuCGCGgggCGGgGCCGGCGCg -3' miRNA: 3'- gaCUG---CCAG-GCGUa--GCUgUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 61109 | 0.74 | 0.405133 |
Target: 5'- -aGGCGGcgccCCGCggCG-CGCCGGCGCc -3' miRNA: 3'- gaCUGCCa---GGCGuaGCuGUGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 32246 | 0.7 | 0.639682 |
Target: 5'- -gGGCGGUCCGCcggaaggcCGGCuaugcaaacGCCGuGCGCg -3' miRNA: 3'- gaCUGCCAGGCGua------GCUG---------UGGC-CGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 138979 | 0.7 | 0.656565 |
Target: 5'- -gGGCGcGUCCGa--CGACcaccaggacacgagGCCGGCGCg -3' miRNA: 3'- gaCUGC-CAGGCguaGCUG--------------UGGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 119051 | 0.7 | 0.669442 |
Target: 5'- gUGGCGGgcugCCaCAUCGGCA-CGGCGg -3' miRNA: 3'- gACUGCCa---GGcGUAGCUGUgGCCGCg -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 100918 | 0.69 | 0.679315 |
Target: 5'- -aGACGG-CCGCGagGACggGCCGGagaGCu -3' miRNA: 3'- gaCUGCCaGGCGUagCUG--UGGCCg--CG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 81508 | 0.69 | 0.679315 |
Target: 5'- -cGGCGG-CCGCGgccaaGACGCUggagcaGGCGCg -3' miRNA: 3'- gaCUGCCaGGCGUag---CUGUGG------CCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 86746 | 0.8 | 0.196479 |
Target: 5'- -cGGgGGUCCGCGUCGGCcaUGGCGCa -3' miRNA: 3'- gaCUgCCAGGCGUAGCUGugGCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 46625 | 0.78 | 0.267162 |
Target: 5'- --uACGcGUCCGgGUCGACGCgGGCGCc -3' miRNA: 3'- gacUGC-CAGGCgUAGCUGUGgCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 94658 | 0.76 | 0.313096 |
Target: 5'- uCUGGCGGcggCCGUugguuuuuAUCGACGCgGGUGCg -3' miRNA: 3'- -GACUGCCa--GGCG--------UAGCUGUGgCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 33556 | 0.76 | 0.341922 |
Target: 5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3' miRNA: 3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5' |
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21383 | 3' | -58.1 | NC_004812.1 | + | 27275 | 0.75 | 0.396838 |
Target: 5'- cCUGcGCGGggaccUCCGCGUCGcCGgCGGCGCc -3' miRNA: 3'- -GAC-UGCC-----AGGCGUAGCuGUgGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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