miRNA display CGI


Results 101 - 120 of 550 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 77131 0.7 0.669442
Target:  5'- gUGGCGGUCgGUGagGAgGCCGG-GCg -3'
miRNA:   3'- gACUGCCAGgCGUagCUgUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 117198 0.69 0.679315
Target:  5'- -cGACGGgacCCGCGUCGgcacGCACCGccaGCuGCg -3'
miRNA:   3'- gaCUGCCa--GGCGUAGC----UGUGGC---CG-CG- -5'
21383 3' -58.1 NC_004812.1 + 60113 0.69 0.689152
Target:  5'- -gGGCagGGUCCGCcgCuGGCGgCGGCGUc -3'
miRNA:   3'- gaCUG--CCAGGCGuaG-CUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 26187 0.69 0.689152
Target:  5'- --cGCGGgCCGCAgCGAgCGgCGGCGCg -3'
miRNA:   3'- gacUGCCaGGCGUaGCU-GUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 4927 0.69 0.698943
Target:  5'- gCUG-CGGcCCGCGgaggCGGCGCUGGaggGCg -3'
miRNA:   3'- -GACuGCCaGGCGUa---GCUGUGGCCg--CG- -5'
21383 3' -58.1 NC_004812.1 + 76754 0.71 0.570372
Target:  5'- -cGGCGG-CCGCuGUCGuACACCcuggucaccauaGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCG-UAGC-UGUGG------------CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 75308 0.72 0.550845
Target:  5'- cCUGGgGGUCUGCGaCG-CGCUGGCGa -3'
miRNA:   3'- -GACUgCCAGGCGUaGCuGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 86746 0.8 0.196479
Target:  5'- -cGGgGGUCCGCGUCGGCcaUGGCGCa -3'
miRNA:   3'- gaCUgCCAGGCGUAGCUGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 46625 0.78 0.267162
Target:  5'- --uACGcGUCCGgGUCGACGCgGGCGCc -3'
miRNA:   3'- gacUGC-CAGGCgUAGCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 94658 0.76 0.313096
Target:  5'- uCUGGCGGcggCCGUugguuuuuAUCGACGCgGGUGCg -3'
miRNA:   3'- -GACUGCCa--GGCG--------UAGCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 33556 0.76 0.341922
Target:  5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3'
miRNA:   3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27275 0.75 0.396838
Target:  5'- cCUGcGCGGggaccUCCGCGUCGcCGgCGGCGCc -3'
miRNA:   3'- -GAC-UGCC-----AGGCGUAGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 61109 0.74 0.405133
Target:  5'- -aGGCGGcgccCCGCggCG-CGCCGGCGCc -3'
miRNA:   3'- gaCUGCCa---GGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 153980 0.74 0.422048
Target:  5'- -cGGCgcaGGUCuCGCGgggCGGgGCCGGCGCg -3'
miRNA:   3'- gaCUG---CCAG-GCGUa--GCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 44183 0.74 0.438504
Target:  5'- -aGcCGGUCUGCGgcggggguggggcUCGGCGgCGGCGCg -3'
miRNA:   3'- gaCuGCCAGGCGU-------------AGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 128169 0.73 0.457112
Target:  5'- --cGCGGcgCUGCGUCGGCGCCuGGCGg -3'
miRNA:   3'- gacUGCCa-GGCGUAGCUGUGG-CCGCg -5'
21383 3' -58.1 NC_004812.1 + 32213 0.73 0.484407
Target:  5'- -gGGCGGUCCGCGggCGGucCGCgGGCGg -3'
miRNA:   3'- gaCUGCCAGGCGUa-GCU--GUGgCCGCg -5'
21383 3' -58.1 NC_004812.1 + 127889 0.73 0.493678
Target:  5'- -cGACGGUCUgGUGUCGGCGCgGG-GCg -3'
miRNA:   3'- gaCUGCCAGG-CGUAGCUGUGgCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 30627 0.72 0.531526
Target:  5'- gUGACGGgCCGCGcgGACGCgGGgCGCg -3'
miRNA:   3'- gACUGCCaGGCGUagCUGUGgCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 146953 0.72 0.545025
Target:  5'- -cGugGGUCCGUccgggcggggugggaGUgGGCGCUGGgGCg -3'
miRNA:   3'- gaCugCCAGGCG---------------UAgCUGUGGCCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.