miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 5' -56 NC_004812.1 + 94508 0.66 0.917514
Target:  5'- aGCGCGCG-GUuCugGugGaCggggGACCUc -3'
miRNA:   3'- -CGCGCGCuCAuGugCugC-Ga---CUGGAa -5'
21383 5' -56 NC_004812.1 + 71227 0.66 0.917514
Target:  5'- gGCGgcCGCGAGgGCGCGGCGggGACg-- -3'
miRNA:   3'- -CGC--GCGCUCaUGUGCUGCgaCUGgaa -5'
21383 5' -56 NC_004812.1 + 41151 0.66 0.917514
Target:  5'- cGCGCgGCGAGcccaGCGGCGCgccGCCa- -3'
miRNA:   3'- -CGCG-CGCUCaug-UGCUGCGac-UGGaa -5'
21383 5' -56 NC_004812.1 + 145041 0.66 0.917514
Target:  5'- aGCGCG-GAGgcggGgGCGGCGgCgGACCUg -3'
miRNA:   3'- -CGCGCgCUCa---UgUGCUGC-GaCUGGAa -5'
21383 5' -56 NC_004812.1 + 16701 0.66 0.917514
Target:  5'- cCG-GCGGGUGCGCGAgcgacCGCggGGCCg- -3'
miRNA:   3'- cGCgCGCUCAUGUGCU-----GCGa-CUGGaa -5'
21383 5' -56 NC_004812.1 + 47416 0.66 0.917514
Target:  5'- uGCGCGCGG----ACGugGCUGAagaaCCUc -3'
miRNA:   3'- -CGCGCGCUcaugUGCugCGACU----GGAa -5'
21383 5' -56 NC_004812.1 + 130706 0.66 0.917514
Target:  5'- aCGCGCGcc--CGCGGCGCUGGgCg- -3'
miRNA:   3'- cGCGCGCucauGUGCUGCGACUgGaa -5'
21383 5' -56 NC_004812.1 + 81643 0.66 0.917514
Target:  5'- gGCGCGUcuucGAGgcGCACc-CGCUGACCg- -3'
miRNA:   3'- -CGCGCG----CUCa-UGUGcuGCGACUGGaa -5'
21383 5' -56 NC_004812.1 + 37204 0.66 0.917514
Target:  5'- aGCaGCGCGGGgccguccACgACGACGC-GGCCg- -3'
miRNA:   3'- -CG-CGCGCUCa------UG-UGCUGCGaCUGGaa -5'
21383 5' -56 NC_004812.1 + 126444 0.66 0.91694
Target:  5'- cGCGCGCGgcaccuaGGUugGCuccuGGCccgGCUGACCa- -3'
miRNA:   3'- -CGCGCGC-------UCAugUG----CUG---CGACUGGaa -5'
21383 5' -56 NC_004812.1 + 114601 0.66 0.911667
Target:  5'- uGCuGCGCGAGcUGCGCGACaaguuuaagggGC-GGCCg- -3'
miRNA:   3'- -CG-CGCGCUC-AUGUGCUG-----------CGaCUGGaa -5'
21383 5' -56 NC_004812.1 + 95490 0.66 0.911667
Target:  5'- uGUGCGCGGGcGC-CGGCGC--GCCg- -3'
miRNA:   3'- -CGCGCGCUCaUGuGCUGCGacUGGaa -5'
21383 5' -56 NC_004812.1 + 122150 0.66 0.911667
Target:  5'- gGCGCGggccUGAGUucgggcCugGGCGCgGGCCUg -3'
miRNA:   3'- -CGCGC----GCUCAu-----GugCUGCGaCUGGAa -5'
21383 5' -56 NC_004812.1 + 147635 0.66 0.911667
Target:  5'- uGCGCGCcAGUggGCGCGACGauucgUGaACCUc -3'
miRNA:   3'- -CGCGCGcUCA--UGUGCUGCg----AC-UGGAa -5'
21383 5' -56 NC_004812.1 + 7020 0.66 0.911667
Target:  5'- cGCGCuGCGGGUuccucgauagcuGCGCGcCGCgacugugGACCg- -3'
miRNA:   3'- -CGCG-CGCUCA------------UGUGCuGCGa------CUGGaa -5'
21383 5' -56 NC_004812.1 + 153051 0.66 0.911667
Target:  5'- gGCGCGggccUGAGUucgggcCugGGCGCgGGCCUg -3'
miRNA:   3'- -CGCGC----GCUCAu-----GugCUGCGaCUGGAa -5'
21383 5' -56 NC_004812.1 + 47998 0.66 0.911667
Target:  5'- cGCGCGCcucguGGUGCACGAagaGCgugguuaGGCCg- -3'
miRNA:   3'- -CGCGCGc----UCAUGUGCUg--CGa------CUGGaa -5'
21383 5' -56 NC_004812.1 + 80179 0.66 0.911667
Target:  5'- aGCGcCGCGGGcUACgucaagGCGACccgGCUGGCCc- -3'
miRNA:   3'- -CGC-GCGCUC-AUG------UGCUG---CGACUGGaa -5'
21383 5' -56 NC_004812.1 + 59693 0.66 0.911667
Target:  5'- cGCGCGCGAGggagagcgGCggcgagcgGCGAgGCgGGCCc- -3'
miRNA:   3'- -CGCGCGCUCa-------UG--------UGCUgCGaCUGGaa -5'
21383 5' -56 NC_004812.1 + 106429 0.66 0.911667
Target:  5'- gGCGCuCGAagauCGCGGCGCUGGCg-- -3'
miRNA:   3'- -CGCGcGCUcau-GUGCUGCGACUGgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.