miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 3' -51.9 NC_004812.1 + 153471 0.67 0.968919
Target:  5'- cGCGUGCUGGUGCUCUaCGcg--CCg- -3'
miRNA:   3'- -UGCGCGACUACGAGAaGUcuuaGGac -5'
21384 3' -51.9 NC_004812.1 + 28160 0.67 0.968919
Target:  5'- gGCGUGCUccUGCUCUccacgCGGGA-CCUGg -3'
miRNA:   3'- -UGCGCGAcuACGAGAa----GUCUUaGGAC- -5'
21384 3' -51.9 NC_004812.1 + 27962 0.67 0.968919
Target:  5'- cGCGUGCUGGUGCUCUaCGcg--CCg- -3'
miRNA:   3'- -UGCGCGACUACGAGAaGUcuuaGGac -5'
21384 3' -51.9 NC_004812.1 + 95113 0.67 0.965689
Target:  5'- uACGUGCUGggGUUCgcggUCGGGaccgcgGUCCUc -3'
miRNA:   3'- -UGCGCGACuaCGAGa---AGUCU------UAGGAc -5'
21384 3' -51.9 NC_004812.1 + 85428 0.68 0.958535
Target:  5'- cCGCGgUGucgcGCUCUaCGGAAUCCUu -3'
miRNA:   3'- uGCGCgACua--CGAGAaGUCUUAGGAc -5'
21384 3' -51.9 NC_004812.1 + 23335 0.68 0.941307
Target:  5'- gACGaaCGC-GAUGCUCUUCGGcgcccUCCUGu -3'
miRNA:   3'- -UGC--GCGaCUACGAGAAGUCuu---AGGAC- -5'
21384 3' -51.9 NC_004812.1 + 85212 0.68 0.941307
Target:  5'- cACGagaCGCUGcgGUUCUUUGGGAgCCUGg -3'
miRNA:   3'- -UGC---GCGACuaCGAGAAGUCUUaGGAC- -5'
21384 3' -51.9 NC_004812.1 + 75248 0.69 0.907188
Target:  5'- gGCGCGCUGcUGCUUggcgCGGAccagcgcGUCCUu -3'
miRNA:   3'- -UGCGCGACuACGAGaa--GUCU-------UAGGAc -5'
21384 3' -51.9 NC_004812.1 + 152763 0.71 0.847571
Target:  5'- gACGCGCUGGUGCUCaugcgccugcgCGGGGaCCUc -3'
miRNA:   3'- -UGCGCGACUACGAGaa---------GUCUUaGGAc -5'
21384 3' -51.9 NC_004812.1 + 27255 0.71 0.847571
Target:  5'- gACGCGCUGGUGCUCaugcgccugcgCGGGGaCCUc -3'
miRNA:   3'- -UGCGCGACUACGAGaa---------GUCUUaGGAc -5'
21384 3' -51.9 NC_004812.1 + 57243 0.74 0.675219
Target:  5'- -gGCGCUGcgGCUCggCGaGAUCCUGg -3'
miRNA:   3'- ugCGCGACuaCGAGaaGUcUUAGGAC- -5'
21384 3' -51.9 NC_004812.1 + 69215 0.78 0.507496
Target:  5'- cACGCGUcGAUGCUCUUCAGGuagaacUCCUc -3'
miRNA:   3'- -UGCGCGaCUACGAGAAGUCUu-----AGGAc -5'
21384 3' -51.9 NC_004812.1 + 136054 1.08 0.007338
Target:  5'- cACGCGCUGAUGCUCUUCAGAAUCCUGu -3'
miRNA:   3'- -UGCGCGACUACGAGAAGUCUUAGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.