miRNA display CGI


Results 81 - 100 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 102938 0.66 0.941831
Target:  5'- gGCAGGaGGUGGAcGAGaUGCUgCGCGCCg -3'
miRNA:   3'- aCGUCUgCCACUU-CUC-GUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 51892 0.66 0.941831
Target:  5'- cGUGGGCGcGUGgcGGcCACgCACGCCc -3'
miRNA:   3'- aCGUCUGC-CACuuCUcGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 29937 0.66 0.941831
Target:  5'- gGCGcGAgGGagcGggGGGCcggGCUCGCGCCg -3'
miRNA:   3'- aCGU-CUgCCa--CuuCUCG---UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 83610 0.66 0.941831
Target:  5'- gUGCGuGACGcuguuUGAcucgcgcgagcGGGGCGCCgACGCCg -3'
miRNA:   3'- -ACGU-CUGCc----ACU-----------UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 153354 0.66 0.920819
Target:  5'- -uCGGGCGGcgGggGcgcgGGCGCCCcuggcggGCGCCg -3'
miRNA:   3'- acGUCUGCCa-CuuC----UCGUGGG-------UGUGG- -5'
21384 5' -55 NC_004812.1 + 122453 0.66 0.920819
Target:  5'- -uCGGGCGGcgGggGcgcgGGCGCCCcuggcggGCGCCg -3'
miRNA:   3'- acGUCUGCCa-CuuC----UCGUGGG-------UGUGG- -5'
21384 5' -55 NC_004812.1 + 79741 0.66 0.921379
Target:  5'- gGCGGACauccccggggGGUGGAcGuGCcuGCCCgACGCCg -3'
miRNA:   3'- aCGUCUG----------CCACUU-CuCG--UGGG-UGUGG- -5'
21384 5' -55 NC_004812.1 + 40983 0.66 0.932088
Target:  5'- cUGCGGcCGGUcuguguccGAGGA-CGCCC-CACCc -3'
miRNA:   3'- -ACGUCuGCCA--------CUUCUcGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 34227 0.66 0.941831
Target:  5'- aGgGGAgGGgcccGAGGGGC-CgCCGCGCCc -3'
miRNA:   3'- aCgUCUgCCa---CUUCUCGuG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 141214 0.66 0.923599
Target:  5'- gGCGGGCGGgGGcgaguacgugccgguGGAGCGguCCCugACUc -3'
miRNA:   3'- aCGUCUGCCaCU---------------UCUCGU--GGGugUGG- -5'
21384 5' -55 NC_004812.1 + 98246 0.66 0.93708
Target:  5'- gGCGGcGCGGcccUGGAGgccGGgACCCGCGCg -3'
miRNA:   3'- aCGUC-UGCC---ACUUC---UCgUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 132983 0.66 0.93708
Target:  5'- cGCGGACGcccgucuGGGCGCCCGgcCACUg -3'
miRNA:   3'- aCGUCUGCcacuu--CUCGUGGGU--GUGG- -5'
21384 5' -55 NC_004812.1 + 18830 0.66 0.93708
Target:  5'- gGCGGGCGGcGGuu-GCGCgCCGC-CCg -3'
miRNA:   3'- aCGUCUGCCaCUucuCGUG-GGUGuGG- -5'
21384 5' -55 NC_004812.1 + 92389 0.67 0.903508
Target:  5'- aGcCGGACGuGggGucGAGCACCUugGCGCCc -3'
miRNA:   3'- aC-GUCUGC-Ca-CuuCUCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 22935 0.67 0.915662
Target:  5'- cGCcuGGACGcccaGAGucuguGGGCACCUACGCCg -3'
miRNA:   3'- aCG--UCUGCca--CUU-----CUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 28635 0.67 0.909705
Target:  5'- aGCAG-CGGaUGggGGccuccgacGCGCCCGCcggacuggcgGCCg -3'
miRNA:   3'- aCGUCuGCC-ACuuCU--------CGUGGGUG----------UGG- -5'
21384 5' -55 NC_004812.1 + 22159 0.67 0.897729
Target:  5'- cGCAGGCGGuUGgcG-GCGCCgugcggaucggcggaGCGCCg -3'
miRNA:   3'- aCGUCUGCC-ACuuCuCGUGGg--------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 125165 0.67 0.890408
Target:  5'- cGCcgGGGCGGgaggcgGGAGGGCccgggcgcgcggGCCCGCcCCg -3'
miRNA:   3'- aCG--UCUGCCa-----CUUCUCG------------UGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 20593 0.67 0.903508
Target:  5'- -cCGGcCGGUGgcGAGgACgCGCGCCu -3'
miRNA:   3'- acGUCuGCCACuuCUCgUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 125364 0.67 0.915662
Target:  5'- aGU-GAgGGUGgcGAGCGCguggaCGCACCu -3'
miRNA:   3'- aCGuCUgCCACuuCUCGUGg----GUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.