miRNA display CGI


Results 101 - 120 of 457 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 97521 0.67 0.915662
Target:  5'- aGcCAGuCGGUcGAGGGGCGCaacuuCCGCaACCa -3'
miRNA:   3'- aC-GUCuGCCA-CUUCUCGUG-----GGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 125081 0.67 0.915662
Target:  5'- gUGCAGACcgcgugccuccgGGcgcUGggGAGCGCCauccgaGCCg -3'
miRNA:   3'- -ACGUCUG------------CC---ACuuCUCGUGGgug---UGG- -5'
21384 5' -55 NC_004812.1 + 3135 0.67 0.915662
Target:  5'- gGCAG-CGGcGcguAGAGCACCaGCACg -3'
miRNA:   3'- aCGUCuGCCaCu--UCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 77238 0.67 0.915662
Target:  5'- cGCGGG-GGUGuGGGGCgcuGCCCucgcggggGCGCCg -3'
miRNA:   3'- aCGUCUgCCACuUCUCG---UGGG--------UGUGG- -5'
21384 5' -55 NC_004812.1 + 100925 0.67 0.915662
Target:  5'- cGCgaGGACGGgccGGAGAGCuggGCCgacguggcggggCGCGCCg -3'
miRNA:   3'- aCG--UCUGCCa--CUUCUCG---UGG------------GUGUGG- -5'
21384 5' -55 NC_004812.1 + 41755 0.67 0.909705
Target:  5'- uUGUuGugGGgcUGggGcuuGGCGCgCCGCGCCu -3'
miRNA:   3'- -ACGuCugCC--ACuuC---UCGUG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 107386 0.67 0.909705
Target:  5'- -aCGGugGGUGAGGGG-GCCgC-CGCCg -3'
miRNA:   3'- acGUCugCCACUUCUCgUGG-GuGUGG- -5'
21384 5' -55 NC_004812.1 + 125165 0.67 0.890408
Target:  5'- cGCcgGGGCGGgaggcgGGAGGGCccgggcgcgcggGCCCGCcCCg -3'
miRNA:   3'- aCG--UCUGCCa-----CUUCUCG------------UGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 6888 0.67 0.897075
Target:  5'- gGUAGACguguuguguguGGUGGucucGGGGCGCgCUGCGCCc -3'
miRNA:   3'- aCGUCUG-----------CCACU----UCUCGUG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 34689 0.67 0.897075
Target:  5'- cUGCgAGGCGugcGUGAGccaggcgacGAGCGCCUcguACACCg -3'
miRNA:   3'- -ACG-UCUGC---CACUU---------CUCGUGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 43260 0.67 0.909705
Target:  5'- gGguGAUGGUGGcgaggggcAGGGUAUCgaACGCCa -3'
miRNA:   3'- aCguCUGCCACU--------UCUCGUGGg-UGUGG- -5'
21384 5' -55 NC_004812.1 + 45333 0.67 0.903508
Target:  5'- gGCGGGCGccGUGucGuugcccGCGCCCACggGCCg -3'
miRNA:   3'- aCGUCUGC--CACuuCu-----CGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 104516 0.67 0.909705
Target:  5'- gGaCGGGCGGUcGucGcGCGCCCGCgaacGCCa -3'
miRNA:   3'- aC-GUCUGCCA-CuuCuCGUGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 2856 0.67 0.909705
Target:  5'- gGCGcGACGccGAGGAcgccgugcGCGCCgGCACCg -3'
miRNA:   3'- aCGU-CUGCcaCUUCU--------CGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 27550 0.67 0.903508
Target:  5'- cGCcGGCGcGcaaGAAGAGCcgGCCCgGCGCCg -3'
miRNA:   3'- aCGuCUGC-Ca--CUUCUCG--UGGG-UGUGG- -5'
21384 5' -55 NC_004812.1 + 145774 0.67 0.909705
Target:  5'- cGCGGGgGGgugccgGAAGcAGCGCgaGCGCCu -3'
miRNA:   3'- aCGUCUgCCa-----CUUC-UCGUGggUGUGG- -5'
21384 5' -55 NC_004812.1 + 22935 0.67 0.915662
Target:  5'- cGCcuGGACGcccaGAGucuguGGGCACCUACGCCg -3'
miRNA:   3'- aCG--UCUGCca--CUU-----CUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 97299 0.67 0.903508
Target:  5'- cGaCAGACGGUGGaccgcgagguGGAGCAgCUgauGCGCa -3'
miRNA:   3'- aC-GUCUGCCACU----------UCUCGUgGG---UGUGg -5'
21384 5' -55 NC_004812.1 + 148580 0.67 0.903508
Target:  5'- gGguGcCGGcGGAG-GCcgGCCCGCGCCc -3'
miRNA:   3'- aCguCuGCCaCUUCuCG--UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 45018 0.67 0.903508
Target:  5'- cGCGGGCGccaccaucuuGUGGGccGGGCucaCCACGCCg -3'
miRNA:   3'- aCGUCUGC----------CACUU--CUCGug-GGUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.