miRNA display CGI


Results 41 - 60 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 59777 0.74 0.533848
Target:  5'- gUGgGGcCGGUGggGgcGGCGCCCuCACCc -3'
miRNA:   3'- -ACgUCuGCCACuuC--UCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 2005 0.74 0.574148
Target:  5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3'
miRNA:   3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 5421 0.74 0.563994
Target:  5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3'
miRNA:   3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 99465 0.74 0.543838
Target:  5'- cGCgAGACGGgcgccuGCGCCCGCGCCc -3'
miRNA:   3'- aCG-UCUGCCacuucuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 127514 0.74 0.574148
Target:  5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3'
miRNA:   3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 2438 0.73 0.60483
Target:  5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3'
miRNA:   3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 106461 0.73 0.6254
Target:  5'- gGCGGACGGaGccGGGCGCCCcccACGCg -3'
miRNA:   3'- aCGUCUGCCaCuuCUCGUGGG---UGUGg -5'
21384 5' -55 NC_004812.1 + 90684 0.73 0.6254
Target:  5'- gGUAGAUGGgGAGGcgcuugagcAGCACCCACggGCCc -3'
miRNA:   3'- aCGUCUGCCaCUUC---------UCGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 4849 0.73 0.6254
Target:  5'- cUGCGGGgcCGGgGAGGGGCcgcgGCCCGCGCg -3'
miRNA:   3'- -ACGUCU--GCCaCUUCUCG----UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 51702 0.73 0.60483
Target:  5'- cGCGuGCcagGAAGAGCGCCUGCGCCa -3'
miRNA:   3'- aCGUcUGccaCUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 35281 0.73 0.615109
Target:  5'- gGUAGGCcacgagccgGGUGGGcAGCACCCGCGCg -3'
miRNA:   3'- aCGUCUG---------CCACUUcUCGUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 127946 0.73 0.60483
Target:  5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3'
miRNA:   3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 88791 0.73 0.584343
Target:  5'- cUGCuuucGGACGGacGggGGGCugCCGgGCCg -3'
miRNA:   3'- -ACG----UCUGCCa-CuuCUCGugGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 82243 0.73 0.610995
Target:  5'- cGCGGGCGG-GAccccgccgcccGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCUucu--------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 15997 0.73 0.615109
Target:  5'- aGCAc-CGGUGcagGAGGGCGCCgGCGCCc -3'
miRNA:   3'- aCGUcuGCCAC---UUCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 109143 0.73 0.615109
Target:  5'- aGCAGGCgGGUGAcgcGGcuCACCCGCAgCg -3'
miRNA:   3'- aCGUCUG-CCACU---UCucGUGGGUGUgG- -5'
21384 5' -55 NC_004812.1 + 90287 0.73 0.615109
Target:  5'- cUGCAGcGCGGgcGAcGGGCGCCUggGCGCCg -3'
miRNA:   3'- -ACGUC-UGCCa-CUuCUCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 15013 0.73 0.60483
Target:  5'- uUGCGGACGG-GGcaGGCGCCCAgggGCCg -3'
miRNA:   3'- -ACGUCUGCCaCUucUCGUGGGUg--UGG- -5'
21384 5' -55 NC_004812.1 + 110896 0.73 0.584343
Target:  5'- gGCAGGCcGUcccGAuGAGCGCCCgGCGCCg -3'
miRNA:   3'- aCGUCUGcCA---CUuCUCGUGGG-UGUGG- -5'
21384 5' -55 NC_004812.1 + 18659 0.73 0.60483
Target:  5'- cGCAGACGGccaUGuccacGGCGCCCGcCGCCu -3'
miRNA:   3'- aCGUCUGCC---ACuuc--UCGUGGGU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.