miRNA display CGI


Results 81 - 100 of 457 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 36339 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 106781 0.72 0.635697
Target:  5'- cGuCGGGCGGggcgcgcgGGAGGGgGCCuCGCGCCg -3'
miRNA:   3'- aC-GUCUGCCa-------CUUCUCgUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 94439 0.72 0.64599
Target:  5'- cGCGGGCGGccgcgGGcccgaagaacccGGAGgcCGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa----CU------------UCUC--GUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 138290 0.72 0.650105
Target:  5'- cUGCGGGCGGUGGucgcggcgggcucggAGgguGGCGCCgGCGCg -3'
miRNA:   3'- -ACGUCUGCCACU---------------UC---UCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 60888 0.72 0.635697
Target:  5'- cUGCAGgcggaagucgGCGGUGggGcgcggcaggcGGCACCCAaugACCa -3'
miRNA:   3'- -ACGUC----------UGCCACuuC----------UCGUGGGUg--UGG- -5'
21384 5' -55 NC_004812.1 + 155170 0.72 0.635697
Target:  5'- gUGgGGGCGGgGAccGGGGC-CCCGCAUCa -3'
miRNA:   3'- -ACgUCUGCCaCU--UCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 138371 0.72 0.64599
Target:  5'- cGCgGGACGGgcGGGGGCGCgUACGCCg -3'
miRNA:   3'- aCG-UCUGCCacUUCUCGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 49481 0.72 0.64599
Target:  5'- cGCcuGACGGcgcUGGAGcucgucaaccGCACCCGCACCa -3'
miRNA:   3'- aCGu-CUGCC---ACUUCu---------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 5438 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 124269 0.72 0.635697
Target:  5'- gUGgGGGCGGgGAccGGGGC-CCCGCAUCa -3'
miRNA:   3'- -ACgUCUGCCaCU--UCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 49605 0.72 0.656273
Target:  5'- gGCAcggcACGGUGGgaGGGGCGCCCGCGg- -3'
miRNA:   3'- aCGUc---UGCCACU--UCUCGUGGGUGUgg -5'
21384 5' -55 NC_004812.1 + 24493 0.71 0.737084
Target:  5'- cGCuccuGGACGG---GGGGCcCCCGCGCCg -3'
miRNA:   3'- aCG----UCUGCCacuUCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 120880 0.71 0.731169
Target:  5'- cGCAGGgGGcUGGgucgGGGccgcgugccgaccccGCGCCCGCACCa -3'
miRNA:   3'- aCGUCUgCC-ACU----UCU---------------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 100147 0.71 0.737084
Target:  5'- cGCGGGCGGcgGGgcGGGGCucaUCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CU--UCUCGug-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 155876 0.71 0.737084
Target:  5'- cGCGcGGCGGgggagggGAGGGGCgggGCCgGCGCCc -3'
miRNA:   3'- aCGU-CUGCCa------CUUCUCG---UGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 106563 0.71 0.737084
Target:  5'- aGCuGAgGGaGGAG-GCGCCCGgGCCg -3'
miRNA:   3'- aCGuCUgCCaCUUCuCGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 37110 0.71 0.697121
Target:  5'- cGUcgAGGCGGUGuu-GGCGCCCGCgucgGCCg -3'
miRNA:   3'- aCG--UCUGCCACuucUCGUGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 80656 0.71 0.737084
Target:  5'- gGCAG-CGG-GAGGAgGCuccccuccuCCCGCACCu -3'
miRNA:   3'- aCGUCuGCCaCUUCU-CGu--------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 141859 0.71 0.737084
Target:  5'- gGCGuGACGGUGGAcGGCAUCgGCAUg -3'
miRNA:   3'- aCGU-CUGCCACUUcUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 67790 0.71 0.727209
Target:  5'- cGCGGGCGGcuucggGggGGGCggGCCCGgcaGCCc -3'
miRNA:   3'- aCGUCUGCCa-----CuuCUCG--UGGGUg--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.