miRNA display CGI


Results 61 - 80 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 4849 0.73 0.6254
Target:  5'- cUGCGGGgcCGGgGAGGGGCcgcgGCCCGCGCg -3'
miRNA:   3'- -ACGUCU--GCCaCUUCUCG----UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 90684 0.73 0.6254
Target:  5'- gGUAGAUGGgGAGGcgcuugagcAGCACCCACggGCCc -3'
miRNA:   3'- aCGUCUGCCaCUUC---------UCGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 36339 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 5438 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 124269 0.72 0.635697
Target:  5'- gUGgGGGCGGgGAccGGGGC-CCCGCAUCa -3'
miRNA:   3'- -ACgUCUGCCaCU--UCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 155170 0.72 0.635697
Target:  5'- gUGgGGGCGGgGAccGGGGC-CCCGCAUCa -3'
miRNA:   3'- -ACgUCUGCCaCU--UCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 106781 0.72 0.635697
Target:  5'- cGuCGGGCGGggcgcgcgGGAGGGgGCCuCGCGCCg -3'
miRNA:   3'- aC-GUCUGCCa-------CUUCUCgUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 60888 0.72 0.635697
Target:  5'- cUGCAGgcggaagucgGCGGUGggGcgcggcaggcGGCACCCAaugACCa -3'
miRNA:   3'- -ACGUC----------UGCCACuuC----------UCGUGGGUg--UGG- -5'
21384 5' -55 NC_004812.1 + 94439 0.72 0.64599
Target:  5'- cGCGGGCGGccgcgGGcccgaagaacccGGAGgcCGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa----CU------------UCUC--GUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 49481 0.72 0.64599
Target:  5'- cGCcuGACGGcgcUGGAGcucgucaaccGCACCCGCACCa -3'
miRNA:   3'- aCGu-CUGCC---ACUUCu---------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 138371 0.72 0.64599
Target:  5'- cGCgGGACGGgcGGGGGCGCgUACGCCg -3'
miRNA:   3'- aCG-UCUGCCacUUCUCGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 73792 0.72 0.64599
Target:  5'- cGCGaGCGG-GgcGGGCGCCgGCGCCc -3'
miRNA:   3'- aCGUcUGCCaCuuCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 138290 0.72 0.650105
Target:  5'- cUGCGGGCGGUGGucgcggcgggcucggAGgguGGCGCCgGCGCg -3'
miRNA:   3'- -ACGUCUGCCACU---------------UC---UCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 73927 0.72 0.656273
Target:  5'- gGCuGGCGGUGgcGcacgaAGCGCCCGaagaGCCg -3'
miRNA:   3'- aCGuCUGCCACuuC-----UCGUGGGUg---UGG- -5'
21384 5' -55 NC_004812.1 + 49605 0.72 0.656273
Target:  5'- gGCAcggcACGGUGGgaGGGGCGCCCGCGg- -3'
miRNA:   3'- aCGUc---UGCCACU--UCUCGUGGGUGUgg -5'
21384 5' -55 NC_004812.1 + 69459 0.72 0.656273
Target:  5'- -aCAGGCGGUc-GGAGCGCC-GCACCa -3'
miRNA:   3'- acGUCUGCCAcuUCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 33865 0.72 0.656273
Target:  5'- cGCGuGGCGGUGGAGGGCAacaGCAgCCa -3'
miRNA:   3'- aCGU-CUGCCACUUCUCGUgggUGU-GG- -5'
21384 5' -55 NC_004812.1 + 5555 0.72 0.666536
Target:  5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 82149 0.72 0.666536
Target:  5'- cGUGGGCGGUGGacgaguuccGGGGCGCgCGgGCCc -3'
miRNA:   3'- aCGUCUGCCACU---------UCUCGUGgGUgUGG- -5'
21384 5' -55 NC_004812.1 + 109179 0.72 0.666536
Target:  5'- gGgAGGCGGUGGAGAGguUCUucaGCCa -3'
miRNA:   3'- aCgUCUGCCACUUCUCguGGGug-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.