miRNA display CGI


Results 81 - 100 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 36456 0.72 0.666536
Target:  5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 3223 0.72 0.673704
Target:  5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 34124 0.72 0.673704
Target:  5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 18453 0.72 0.676771
Target:  5'- cGguGGCGcGgcgGggGGGCGcggcCCCGCGCCc -3'
miRNA:   3'- aCguCUGC-Ca--CuuCUCGU----GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 11749 0.72 0.676771
Target:  5'- cGgGGACGucGAAccGCACCCACACCa -3'
miRNA:   3'- aCgUCUGCcaCUUcuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 15722 0.72 0.676771
Target:  5'- cGCAagaacGACGGcgaucGAGGGGCcgcgggggccGCCCGCGCCg -3'
miRNA:   3'- aCGU-----CUGCCa----CUUCUCG----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 75699 0.72 0.676771
Target:  5'- aGCAGcccccCGGUGAugcGcAGCAgCCGCGCCa -3'
miRNA:   3'- aCGUCu----GCCACUu--C-UCGUgGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 154163 0.72 0.676771
Target:  5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3'
miRNA:   3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 28655 0.72 0.676771
Target:  5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3'
miRNA:   3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 51194 0.72 0.685951
Target:  5'- cGCGGGCGccGGGccccgccGAGCGCCgGCACCg -3'
miRNA:   3'- aCGUCUGCcaCUU-------CUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 23480 0.72 0.686969
Target:  5'- cUGCuGGCGGUGGucgaGGGGCugCUgucGCACUa -3'
miRNA:   3'- -ACGuCUGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 147116 0.71 0.697121
Target:  5'- gGCAGugGGUGGAGuacagGCCUGCGCa -3'
miRNA:   3'- aCGUCugCCACUUCucg--UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 37110 0.71 0.697121
Target:  5'- cGUcgAGGCGGUGuu-GGCGCCCGCgucgGCCg -3'
miRNA:   3'- aCG--UCUGCCACuucUCGUGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 56439 0.71 0.704194
Target:  5'- gGCGGGCGGcGGGccuggcggcgcgauGAGCcccgccccgccGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUU--------------CUCG-----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 30499 0.71 0.70621
Target:  5'- cGCGGcGCGGggGAGGGGaCGCCCggggccgggggccGCGCCg -3'
miRNA:   3'- aCGUC-UGCCa-CUUCUC-GUGGG-------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 156007 0.71 0.70621
Target:  5'- cGCGGcGCGGggGAGGGGaCGCCCggggccgggggccGCGCCg -3'
miRNA:   3'- aCGUC-UGCCa-CUUCUC-GUGGG-------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 105416 0.71 0.707217
Target:  5'- cGCucGGCGGggcccGGCGCCCGCGCCc -3'
miRNA:   3'- aCGu-CUGCCacuucUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 4449 0.71 0.707217
Target:  5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3'
miRNA:   3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 135997 0.71 0.707217
Target:  5'- cGCGuGACGGacgcccUGAGcGGGCGCCC-CGCCc -3'
miRNA:   3'- aCGU-CUGCC------ACUU-CUCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 129957 0.71 0.707217
Target:  5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3'
miRNA:   3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.