miRNA display CGI


Results 101 - 120 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 18713 0.71 0.716249
Target:  5'- cGCAGuagcuccGCGGcgcuGGGGCGCCgCGCGCCa -3'
miRNA:   3'- aCGUC-------UGCCacu-UCUCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 156180 0.71 0.71725
Target:  5'- gGCGGGCGcGcGcGAGAGCGCCgCGCGCg -3'
miRNA:   3'- aCGUCUGC-CaC-UUCUCGUGG-GUGUGg -5'
21384 5' -55 NC_004812.1 + 125279 0.71 0.71725
Target:  5'- gGCGGGCGcGcGcGAGAGCGCCgCGCGCg -3'
miRNA:   3'- aCGUCUGC-CaC-UUCUCGUGG-GUGUGg -5'
21384 5' -55 NC_004812.1 + 106080 0.71 0.720246
Target:  5'- aGCAucauguuguuuacGGCGGUGGAGAGCagcgcgcgggugagcGCCUcgGCGCCc -3'
miRNA:   3'- aCGU-------------CUGCCACUUCUCG---------------UGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 80517 0.71 0.724229
Target:  5'- cGCGGACcuGGcGGAGaAGCucgcggaccgggacGCCCGCGCCg -3'
miRNA:   3'- aCGUCUG--CCaCUUC-UCG--------------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 155726 0.71 0.727209
Target:  5'- gGUGGGgGGUGggGGGCGCgCGCGg- -3'
miRNA:   3'- aCGUCUgCCACuuCUCGUGgGUGUgg -5'
21384 5' -55 NC_004812.1 + 30218 0.71 0.727209
Target:  5'- gGUGGGgGGUGggGGGCGCgCGCGg- -3'
miRNA:   3'- aCGUCUgCCACuuCUCGUGgGUGUgg -5'
21384 5' -55 NC_004812.1 + 81108 0.71 0.727209
Target:  5'- gUGCGGGCGGcgUGguGGGCcguggccaGCCgGCGCCa -3'
miRNA:   3'- -ACGUCUGCC--ACuuCUCG--------UGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 67790 0.71 0.727209
Target:  5'- cGCGGGCGGcuucggGggGGGCggGCCCGgcaGCCc -3'
miRNA:   3'- aCGUCUGCCa-----CuuCUCG--UGGGUg--UGG- -5'
21384 5' -55 NC_004812.1 + 120880 0.71 0.731169
Target:  5'- cGCAGGgGGcUGGgucgGGGccgcgugccgaccccGCGCCCGCACCa -3'
miRNA:   3'- aCGUCUgCC-ACU----UCU---------------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 151781 0.71 0.731169
Target:  5'- cGCAGGgGGcUGGgucgGGGccgcgugccgaccccGCGCCCGCACCa -3'
miRNA:   3'- aCGUCUgCC-ACU----UCU---------------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 106563 0.71 0.737084
Target:  5'- aGCuGAgGGaGGAG-GCGCCCGgGCCg -3'
miRNA:   3'- aCGuCUgCCaCUUCuCGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 80656 0.71 0.737084
Target:  5'- gGCAG-CGG-GAGGAgGCuccccuccuCCCGCACCu -3'
miRNA:   3'- aCGUCuGCCaCUUCU-CGu--------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 108054 0.71 0.737084
Target:  5'- cUGCGGGCGGUGAGGGGgAagUCgGCGgCg -3'
miRNA:   3'- -ACGUCUGCCACUUCUCgU--GGgUGUgG- -5'
21384 5' -55 NC_004812.1 + 30368 0.71 0.737084
Target:  5'- cGCGcGGCGGgggagggGAGGGGCgggGCCgGCGCCc -3'
miRNA:   3'- aCGU-CUGCCa------CUUCUCG---UGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 73301 0.71 0.737084
Target:  5'- cGCuGGCGGUccgucuccGAGAGCuGCCUGCGCCu -3'
miRNA:   3'- aCGuCUGCCAc-------UUCUCG-UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 100147 0.71 0.737084
Target:  5'- cGCGGGCGGcgGGgcGGGGCucaUCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CU--UCUCGug-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 155876 0.71 0.737084
Target:  5'- cGCGcGGCGGgggagggGAGGGGCgggGCCgGCGCCc -3'
miRNA:   3'- aCGU-CUGCCa------CUUCUCG---UGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 141859 0.71 0.737084
Target:  5'- gGCGuGACGGUGGAcGGCAUCgGCAUg -3'
miRNA:   3'- aCGU-CUGCCACUUcUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 24493 0.71 0.737084
Target:  5'- cGCuccuGGACGG---GGGGCcCCCGCGCCg -3'
miRNA:   3'- aCG----UCUGCCacuUCUCGuGGGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.