miRNA display CGI


Results 121 - 140 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 108849 0.7 0.742966
Target:  5'- cGCgAGACGGgaacgcaGAAGAGCGCCgcgauuuucugcaGCACCc -3'
miRNA:   3'- aCG-UCUGCCa------CUUCUCGUGGg------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 108750 0.7 0.743943
Target:  5'- cUGCAGGCGcUGcggcuggggggcgcGGGGGCGCCUACgACCu -3'
miRNA:   3'- -ACGUCUGCcAC--------------UUCUCGUGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 88968 0.7 0.745893
Target:  5'- aGCAGugguCGGUGGAGcaGGCGCugccgugCCugGCCg -3'
miRNA:   3'- aCGUCu---GCCACUUC--UCGUG-------GGugUGG- -5'
21384 5' -55 NC_004812.1 + 72041 0.7 0.746867
Target:  5'- aGgAGGCGGUGGaggggGGGGCuGCCCGCGguuuCCg -3'
miRNA:   3'- aCgUCUGCCACU-----UCUCG-UGGGUGU----GG- -5'
21384 5' -55 NC_004812.1 + 94119 0.7 0.755586
Target:  5'- gGCGGGCGcGUGGuccgcgccggcccAGAgGCGCgCGCGCCu -3'
miRNA:   3'- aCGUCUGC-CACU-------------UCU-CGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 149082 0.7 0.756549
Target:  5'- aGUGGGCGG-GAGGGGCGgC-GCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUUCUCGUgGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 39846 0.7 0.756549
Target:  5'- cGUAGGCGGUGcgGGGGGCcggggGCUC-CGCCa -3'
miRNA:   3'- aCGUCUGCCAC--UUCUCG-----UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 105202 0.7 0.756549
Target:  5'- gGCGGGUGGUGGGcGAGCGCgCCggcggccgGCGCCu -3'
miRNA:   3'- aCGUCUGCCACUU-CUCGUG-GG--------UGUGG- -5'
21384 5' -55 NC_004812.1 + 23574 0.7 0.756549
Target:  5'- aGUGGGCGG-GAGGGGCGgC-GCGCCg -3'
miRNA:   3'- aCGUCUGCCaCUUCUCGUgGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 27461 0.7 0.766119
Target:  5'- cGCAGACGc-GGGcGGCGCCgCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCUUcUCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 116399 0.7 0.766119
Target:  5'- cGCGGGCGGUcGccGAuccgcugcGgGCCCGCGCCc -3'
miRNA:   3'- aCGUCUGCCA-CuuCU--------CgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 108796 0.7 0.766119
Target:  5'- uUGCGGGaaacCGGUGAccggaGGGGCgACgCACGCCc -3'
miRNA:   3'- -ACGUCU----GCCACU-----UCUCG-UGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 152969 0.7 0.766119
Target:  5'- cGCAGACGc-GGGcGGCGCCgCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCUUcUCGUGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 72779 0.7 0.766119
Target:  5'- cGgAGACGGcc--GGGCGCCCuCGCCg -3'
miRNA:   3'- aCgUCUGCCacuuCUCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 101428 0.7 0.769914
Target:  5'- gGCGGuCGGUGAgcucgcGGAGCGCguccccggugaggugCCAgGCCa -3'
miRNA:   3'- aCGUCuGCCACU------UCUCGUG---------------GGUgUGG- -5'
21384 5' -55 NC_004812.1 + 114312 0.7 0.775569
Target:  5'- gGCGGcgcccaggaACGGacgcGGGGCGCCCGCGCUa -3'
miRNA:   3'- aCGUC---------UGCCacu-UCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 29230 0.7 0.775569
Target:  5'- gGCGGGCGGgggucgcgGAGGAGCggGCCgGgGCUg -3'
miRNA:   3'- aCGUCUGCCa-------CUUCUCG--UGGgUgUGG- -5'
21384 5' -55 NC_004812.1 + 154738 0.7 0.775569
Target:  5'- gGCGGGCGGgggucgcgGAGGAGCggGCCgGgGCUg -3'
miRNA:   3'- aCGUCUGCCa-------CUUCUCG--UGGgUgUGG- -5'
21384 5' -55 NC_004812.1 + 63375 0.7 0.775569
Target:  5'- cGCGGAUcucgaGGcGcGGGGCcuGCCCGCGCCg -3'
miRNA:   3'- aCGUCUG-----CCaCuUCUCG--UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 139140 0.7 0.775569
Target:  5'- cGCGGcauccgccGCGGUcGAGAGCGCCaccccCACCg -3'
miRNA:   3'- aCGUC--------UGCCAcUUCUCGUGGgu---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.